Gene detail

Detailed information of amur_s2481.g1.t1 in Acropora muricata

Genomic Location: sc0002481_pilon:1...6925
NR annotation: XP_044180318.1, uncharacterized protein LOC114949863 isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amur_s2481.g1.t1

CCGAATTATGCATGAGGGATAGCGTTAGCACTTTGTTGCATGTATTCGCGAATGGAAGGTATGGAATTCTTTGAGGGAACCGAGAAACTCATGGAAGTGTGGTGGTCCCCTGTGTTGGGAGATGATGGTACTTTCGCTGATTTAAGAACAGCTTCAAGgaaatgttgaaatcgagtcattttctttttattagtacgaaatttcaaacaaaaggaaagtagtcgtcgggtctctatttcgttacagtctcgctccagtctccttcctttgacccatttcgtttgatgcaatgtctcgaaccgcctggtttttagttcttcttctgtgctatgttttaaaaagcgttatttcgggaaatgatgataagtctcctcatacataatcaggattatcgatgaatgcagagGTTAAGCGAAGAAATTTGCCTTTGGATGATGCTGAGTACGGCGCTTTGTTTGGGATACTTAATGGAGACAAAACATTTAAGGATTGGCCAAAGAATCAGGATAGTAGTTTAAGGCAGAGAGTGTACAAGAAATGGAAGAGTGGTCAGTATGAGATGAAAGAAGTTCACGATCCCATGGCAGGAAACACGGCTCAACGCATTGTACATACCGATACAGGTTCCATCGTGATTAAAAAATCAGAACTTTCGTCAATTATTCATGGTTACTATGACGAAAGTAAAGGTGATGGCGCGCTAAAGCTCTCGAAAAGTATACGACATCGATACAGCGGTCTATCGCGAAATTGTATTCAGAAAAACCTCAATGTGATGAAAGAAACTCAGAAAATAAGGCCTCTTTTCCAAAACAAGGCTCCACTTCGCCCTATAAAAGCAGCTAAAGTGCAAGAGCGCCATCAAGTAGATCTGGTTAACATGCAGAGCATGCCTGTCACCGTGGGTGGAATAACGTACAAGTACATCATGTCCGTGATTGATATATTTAGTAGGTTTGTGTTCTTGAGACCCCTCCAATCTAAGGAATCTGCTGAGGTAGCAGAAAATCTTCGAAACATCTACAATGAACATGGGCCACCAGAAATCCTTCAGAGTGATCAGGGTACAGAATTCAAAGGTGTTGTTAAGACACTTTGTGAAGCTCTAAACGTAAGAATTATAAAAAGCTCAGCATATAGTCCGCAAACACAAGGAAAGGATGAGCGTTCTCACCGTACATGGAAAGAAAAGATAAAGTACGATATAATCAACGGTGATGAAGAGTTGAATTGGGTAGAAAATCTCCCGATTTACCAACAACTTTACAACGAGTCCCCACATAGCTCTCTAGGGATGCAATCACCCTTTGAAGTGTACTATGGTAGACCGCCCAACAGAGTTAGAAATAAACTTTCACTTGGCGAAAGGAAGGCTTTTGAAGTATCTGAAGAGGGCGAAACTGAATTCCAGCTTAAGTCTCCAAGAAAAGACACTCTAAGGCAATTGGAAAAAGAGAGAGGTAGCGTCAGAGATGAAGCCCTTAAAGCATCGAAGGACGCCTCGCAAAAAATGATACAACGAGAACTTAAGCGTAACCCACCTTCTCTCTATTATGTTGGAGAAACTGTTCTTGTTCGCGTTGCGAAAACAAAGAAACCTGTGAAGGGCAAGAAGACAGCCTTAAGAGGTACTTGTGAGGGACTAATTTTTAAAGCTGATCATGATTTACACAGATATTATGTTGTTTTTGAGGATCCGAACACTGCGAAGCAGCAGAAGATCTGGGTGAAAGTTGACGACATAACGTCATTGACAAAAGACGAAGAGAAACGAAGGCAAGATACTGCAAAGAAACAGAACAACAAACGAAAACGCTTAAGCCCTGATAACTGTACGTCAACTCCCACTAATTCAAAACATGTAAAACTAACAAATGATGTCAACGTATTAGATGGAAGTATCGCCAACGTTTTGTCCTTTGAAAAATTGAAAGGGGACACGATCAACCTTTATTTTGATTTTCTTCGTCAGAGATCGTTGTCTAAACAAGAAAGCGTCTCTTTGGCAAGTTCTTACTTTTACGCCTCTCTTGATAAGCCGGAAAATATGTCGTCATACAAAAACTATGTTGGAAAAAACCCATTGCAGAACTACGAGCATCTCATTATACCTGTGCACCTTACAACTGAGGAACACTGGTTGCTTGCCATTATCAGCATCATCAACCTGTGTATATATATTTATGATTCTGCCAGCTTTCCAGAGAACACATACCAATCAATATTCCAAACCCTGAAGCA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|ULP\|ULP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR003653	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan