Gene detail

Detailed information of amur_s2896.g1.t1 in Acropora muricata

Genomic Location: sc0002896_pilon:1...5370
NR annotation: XP_029201145.2, low-density lipoprotein receptor-related protein 8-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q07954	Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens OX=9606 GN=LRP1 PE=1 SV=2
Q91ZX7	Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus OX=10090 GN=Lrp1 PE=1 SV=1
G3V928	Prolow-density lipoprotein receptor-related protein 1 OS=Rattus norvegicus OX=10116 GN=Lrp1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan