Gene detail

Detailed information of amur_s3003.g1.t2 in Acropora muricata

Genomic Location: sc0003003_pilon:1...5073
NR annotation: XP_029201892.2, transcription factor IIIB 90 kDa subunit-like isoform X2 [Acropora millepora]
Species Acropora muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92994	Transcription factor IIIB 90 kDa subunit OS=Homo sapiens OX=9606 GN=BRF1 PE=1 SV=1
Q8CFK2	Transcription factor IIIB 90 kDa subunit OS=Mus musculus OX=10090 GN=Brf1 PE=1 SV=1
Q9P6R0	Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=brf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003281 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00382 all species →	TFIIB	Transcription factor TFIIB repeat	Domain	Interproscan
PF07741 all species →	BRF1	Brf1-like TBP-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013150 all species →	Domain	Transcription factor TFIIB, cyclin-like domain	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan
IPR011665 all species →	Domain	Brf1, TBP-binding domain	Interproscan
IPR000812 all species →	Family	Transcription factor TFIIB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11618 all species →	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan
GO:0000126 all species →	Cellular Component	transcription factor TFIIIB complex	Interproscan
GO:0000995 all species →	Molecular Function	RNA polymerase III general transcription initiation factor activity	Interproscan
GO:0001006 all species →	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006383 all species →	Biological Process	transcription by RNA polymerase III	Interproscan
GO:0070897 all species →	Biological Process	transcription preinitiation complex assembly	Interproscan
GO:0097550 all species →	Cellular Component	transcription preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amur_s3003.g1.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of amur_s3003.g1.t2 across 82 RNA-seq samples of Acropora muricata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

82Samples

0TPM > 0

2Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	79	0	0.00	0.00
Severed branch	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR12710849	Polyps	Polyps	OA 2 day3	not recorded	SRP199550
SRR12710850	Polyps	Polyps	OA 2 day3	not recorded	SRP199550
SRR12710851	Polyps	Polyps	OA 2 day3	not recorded	SRP199550
SRR12710859	Polyps	Polyps	OA 2 day9	not recorded	SRP199550
SRR12710860	Polyps	Polyps	OA 2 day9	not recorded	SRP199550
SRR12710861	Polyps	Polyps	OA 2 day9	not recorded	SRP199550
SRR12786899	Polyps	Polyps	OA 2 day0	not recorded	SRP199550
SRR12786900	Polyps	Polyps	OA 2 day0	not recorded	SRP199550
SRR12786901	Polyps	Polyps	OA 2 day0	not recorded	SRP199550
SRR12807382	Polyps	Polyps	OA2 day0	not recorded	SRP199550
SRR12904784	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904785	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904786	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12927881	Polyps	Polyps	E2 day0	not recorded	SRP199550
SRR12959191	Polyps	polyps	E2 day21	not recorded	SRP199550
SRR12959192	Polyps	Polyps	E2 day21	not recorded	SRP199550
SRR12959193	Polyps	Polyps	E2 day21	not recorded	SRP199550
SRR12959195	Polyps	Polyps	E2 day0	not recorded	SRP199550
SRR12959204	Polyps	Polyps	E2 day15	not recorded	SRP199550
SRR12959205	Polyps	Polyps	E2 day15	not recorded	SRP199550
SRR12959206	Polyps	Polyps	E2 day0	not recorded	SRP199550
SRR12959207	Polyps	Polyps	E2 day15	not recorded	SRP199550
SRR12959217	Polyps	Polyps	E2 day0	not recorded	SRP199550
SRR12959218	Polyps	Polyps	E2 day9	not recorded	SRP199550
SRR12959219	Polyps	Polyps	E2 day9	not recorded	SRP199550
SRR12959220	Polyps	Polyps	E2 day9	not recorded	SRP199550
SRR12959231	Polyps	Polyps	E2 day3	not recorded	SRP199550
SRR12959232	Polyps	Polyps	E2 day3	not recorded	SRP199550
SRR12959233	Polyps	Polyps	E2 day3	not recorded	SRP199550
SRR27868158	Polyps	Polyps	regeneration day6	not recorded	SRP199550
SRR27868159	Polyps	Polyps	regeneration day6	not recorded	SRP199550
SRR27868160	Polyps	Polyps	regeneration day6	not recorded	SRP199550
SRR27868165	Polyps	Polyps	regeneration day3	not recorded	SRP199550
SRR27868174	Polyps	Polyps	regeneration day39	not recorded	SRP199550
SRR27868175	Polyps	Polyps	regeneration day39	not recorded	SRP199550
SRR27868176	Polyps	Polyps	regeneration day3	not recorded	SRP199550
SRR27868177	Polyps	Polyps	regeneration day39	not recorded	SRP199550
SRR27868178	Polyps	Polyps	regeneration day36	not recorded	SRP199550
SRR27868179	Polyps	Polyps	regeneration day36	not recorded	SRP199550
SRR27868180	Polyps	Polyps	regeneration day36	not recorded	SRP199550
SRR27868181	Polyps	Polyps	regeneration day33	not recorded	SRP199550
SRR27868182	Polyps	Polyps	regeneration day33	not recorded	SRP199550
SRR27868183	Polyps	Polyps	regeneration day33	not recorded	SRP199550
SRR27868184	Polyps	Polyps	regeneration day30	not recorded	SRP199550
SRR27868185	Polyps	Polyps	regeneration day30	not recorded	SRP199550
SRR27868186	Polyps	Polyps	regeneration day30	not recorded	SRP199550
SRR27868187	Polyps	Polyps	regeneration day3	not recorded	SRP199550
SRR27868188	Polyps	Polyps	regeneration day27	not recorded	SRP199550
SRR27868189	Polyps	Polyps	regeneration day27	not recorded	SRP199550
SRR27868190	Polyps	Polyps	regeneration day27	not recorded	SRP199550
SRR27868191	Polyps	Polyps	regeneration day24	not recorded	SRP199550
SRR27868192	Polyps	Polyps	regeneration day24	not recorded	SRP199550
SRR27868193	Polyps	Polyps	regeneration day24	not recorded	SRP199550
SRR27868194	Polyps	Polyps	regeneration day21	not recorded	SRP199550
SRR27868195	Polyps	Polyps	regeneration day21	not recorded	SRP199550
SRR27868196	Polyps	Polyps	regeneration day21	not recorded	SRP199550
SRR27868197	Polyps	Polyps	regeneration day18	not recorded	SRP199550
SRR27868198	Polyps	Polyps	regeneration day0	not recorded	SRP199550
SRR27868199	Polyps	Polyps	regeneration day18	not recorded	SRP199550
SRR27868200	Polyps	Polyps	regeneration day18	not recorded	SRP199550
SRR27868201	Polyps	Polyps	regeneration day15	not recorded	SRP199550
SRR27868202	Polyps	Polyps	regeneration day15	not recorded	SRP199550
SRR27868203	Polyps	Polyps	regeneration day15	not recorded	SRP199550
SRR27868204	Polyps	Polyps	regeneration day12	not recorded	SRP199550
SRR27868205	Polyps	Polyps	regeneration day12	not recorded	SRP199550
SRR27868206	Polyps	Polyps	regeneration day12	not recorded	SRP199550
SRR27868207	Polyps	Polyps	regeneration day9	not recorded	SRP199550
SRR27868208	Polyps	Polyps	regeneration day9	not recorded	SRP199550
SRR27868209	Polyps	Polyps	regeneration day0	not recorded	SRP199550
SRR27868210	Polyps	Polyps	regeneration day0	not recorded	SRP199550
SRR27940222	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940224	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940225	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940226	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940227	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940228	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940229	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9613488	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9613516	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12995717	Severed branch	Severed branch	regeneration day0	not recorded	SRP199550
SRR12996627	Severed branch	Severed branch	regeneration day0	not recorded	SRP199550
SRR12996628	Severed branch	Severed branch	regeneration High gene expression	not recorded	SRP199550

Source: CnidoSite RNA-seq expression matrices (AMURI_TPM, StringTie quantification over 82 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.