Gene detail

Detailed information of anas_s0010.g154.t1 in Acropora nasuta

Genomic Location: sc0000010_pilon:2440038...2456461
NR annotation: XP_015773262.1, PREDICTED: contactin-associated protein-like 2 isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

anas_s0010.g154.t1

ATGAAGAGTGACGAGGAAATTGCTTGTGAACTGTTTCTCTCGCCGAGAACGGTGATGTGTATCTGCCATAAGTTTGTTATGACTGGAAGCGTTTTAGCTTACAAGGATGGTCGACCTGTCAGCACAACAACACTCCATCAACACTGGGAATATATTCTGCTGGAGGCGATTGTTAACGAGCCTGCAACACGGCTACATCAGCTCGCTACAACAATACAAGAACAAACTGGTTCCGAGTTCGACATTTCTACAATGTGTAGGGTACTTCACAGACTCGGTTTTACAAACAAGAAGGTAAGAGAAATTGCAGCCCAAAGGAGAGACGACCTGCGTGCTCAATTCAGAGCTGACATGCAAAATCATCGGCCTCACCAGCTCATTTTCATTGACGAGACAGGATTTGACAGATGCTTATCAAGAAAATATGACTATTCTCCGAAAGGGCAGCGGGCTGAAGTGAGAAGGATTAGAACGAATAATCGGCGCATAACAGTGATATCCGCCATTGGATATGATGGATACTTAGCTATGAGTGTGCTCGAACCAGGCCAGAAATTTAATCGATTTGTTTTTGCTGAATTTCTCCGTAACCAGATAATGCCTCTTCTCAACCCATATGCATACAACGGGAGAACACTCACTCTAATTGTGTTTGCATCTATGAGTCAAGATTTTTGTGGAAGAGTTTTCAAGACCCGAGTTGGCCATGCCTTAGTTGGACATAACATGAGCTCTGATCTTGTTGGCGACGAGTTCGAATGTCAGCTGAAATGCATACATACTCAGCCTTGCAAGTCATTCAACGTTCACTTCTCGAGTAATCAAGCGAACAAACACGTCTGTGAGCTGAACAACCAAACACGAGAAATGAAGCCGAGTGATTTTAAAGCGAGGAAAGGATCAAACTACTACGGCCCGGTTCAGGTGTCGTGTGTCGACATTTCTCATGAATACAAAGCAAAGCAAAGTCAGGTTTCAGCAAAGACTTGCACTCAGATCAAATCTCGCAATCCAAAGGCCACAAGTGGTTCTTATATCATCGATCCTGATGGACCAGGTGGTAATGGATCGTTTATGGTGTTTTGTGACATGAATGACAAAATGGCAGTTGGCGTGACAGTCGTCGGTCACGACAGTGAGAATCGAACGAGAGTCACAGGCTTCGAAATTCCAGGGTCCTATAAGCGAGATGTTTCCTACCTGGGGGGAGACCTCAACGCTGTGGCAAAGTTGAGTGGTCTTGTGGATGCCTCTAAAAACTGCGAGCAGTTTATCAAGTACGAGTGTTACAATTCTGTTCTCCTCAGCTCTAACCCATATGGCTGGTGGGTGTCACGTAACTTTGAGAAGATGACATACTGGGGCGGGGCCACGCCAGCAGATTCCCTCAAGTGTGCATGCGGAGTAACCTCGCCCAATTCATGTGCAGGAAACAAAGGATGTAACTGCGATATTAATGACCACGTATGGCGCGAGGACGAAGTTTCAGGAAAGACTTGCACTCAGATCAAATCTCGCAATCCAAAGGCCACAAGTGGTTCTTATATCATCGATCCTGATGGACCAGGTGGTAATGGATCGTTTACGGTGTTTTGTGACATGAATGACAAAATGGCAGTTGGCGTGACAGTCGTCGGTCACGACAGTGAGAACCGAACGAGAGTCACAGGCTTCGAACTTCCAGGGTCCTATAAGCGAGATGTTTCCTACCTGGGGGGAGACTTCAACGCTGTGGCAAAGTTGAGTGGTCTTGTGGATGCCTCTAAAAACTGCGAGCAGTTTATCAAGTACGAGTGTTACAATTCTATTCTCTTCAGGTCTAACCCAATTGGCTGGTGGGTGTCACGTAACTTTGAGAAGATGACATACTGGGGTGGAGCCACGTCAGCAGATTCCCTCAAGTGCGCATGCGGAGTAAACTCGCCCAATTCATGTGCAGGAAACTACGGATGTAACTGCGATATTAATGACAGCAAATGGCGCGAGGACGAAGGTTTGCTCAAAGAAAAGTCTGATCTTCCAGTGTTACAGTTGAGGTTTGGAGATACTGGAGACAACGGTGAAAAAGGATACTATACTCTGGGAAAACTCCGATGTTTCGGAGAAGAGTGA

Transcript

anas_s0010.g154.t1

CCATATTCAGAGGATCTCCGCTGGCATAAATTTTTATTAATGAAGAGTGACGAGGAAATTGCTTGTGAACTGTTTCTCTCGCCGAGAACGGTGATGTGTATCTGCCATAAGTTTGTTATGACTGGAAGCGTTTTAGCTTACAAGGATGGTCGACCTGTCAGCACAACAACACTCCATCAACACTGGGAATATATTCTGCTGGAGGCGATTGTTAACGAGCCTGCAACACGGCTACATCAGCTCGCTACAACAATACAAGAACAAACTGGTTCCGAGTTCGACATTTCTACAATGTGTAGGGTACTTCACAGACTCGGTTTTACAAACAAGAAGGTAAGAGAAATTGCAGCCCAAAGGAGAGACGACCTGCGTGCTCAATTCAGAGCTGACATGCAAAATCATCGGCCTCACCAGCTCATTTTCATTGACGAGACAGGATTTGACAGATGCTTATCAAGAAAATATGACTATTCTCCGAAAGGGCAGCGGGCTGAAGTGAGAAGGATTAGAACGAATAATCGGCGCATAACAGTGATATCCGCCATTGGATATGATGGATACTTAGCTATGAGTGTGCTCGAACCAGGCCAGAAATTTAATCGATTTGTTTTTGCTGAATTTCTCCGTAACCAGATAATGCCTCTTCTCAACCCATATGCATACAACGGGAGAACACTCACTCTAATTGTGTTTGCATCTATGAGTCAAGATTTTTGTGGAAGAGTTTTCAAGACCCGAGTTGGCCATGCCTTAGTTGGACATAACATGAGCTCTGATCTTGTTGGCGACGAGTTCGAATGTCAGCTGAAATGCATACATACTCAGCCTTGCAAGTCATTCAACGTTCACTTCTCGAGTAATCAAGCGAACAAACACGTCTGTGAGCTGAACAACCAAACACGAGAAATGAAGCCGAGTGATTTTAAAGCGAGGAAAGGATCAAACTACTACGGCCCGGTTCAGGTGTCGTGTGTCGACATTTCTCATGAATACAAAGCAAAGCAAAGTCAGGTTTCAGCAAAGACTTGCACTCAGATCAAATCTCGCAATCCAAAGGCCACAAGTGGTTCTTATATCATCGATCCTGATGGACCAGGTGGTAATGGATCGTTTATGGTGTTTTGTGACATGAATGACAAAATGGCAGTTGGCGTGACAGTCGTCGGTCACGACAGTGAGAATCGAACGAGAGTCACAGGCTTCGAAATTCCAGGGTCCTATAAGCGAGATGTTTCCTACCTGGGGGGAGACCTCAACGCTGTGGCAAAGTTGAGTGGTCTTGTGGATGCCTCTAAAAACTGCGAGCAGTTTATCAAGTACGAGTGTTACAATTCTGTTCTCCTCAGCTCTAACCCATATGGCTGGTGGGTGTCACGTAACTTTGAGAAGATGACATACTGGGGCGGGGCCACGCCAGCAGATTCCCTCAAGTGTGCATGCGGAGTAACCTCGCCCAATTCATGTGCAGGAAACAAAGGATGTAACTGCGATATTAATGACCACGTATGGCGCGAGGACGAAGTTTCAGGAAAGACTTGCACTCAGATCAAATCTCGCAATCCAAAGGCCACAAGTGGTTCTTATATCATCGATCCTGATGGACCAGGTGGTAATGGATCGTTTACGGTGTTTTGTGACATGAATGACAAAATGGCAGTTGGCGTGACAGTCGTCGGTCACGACAGTGAGAACCGAACGAGAGTCACAGGCTTCGAACTTCCAGGGTCCTATAAGCGAGATGTTTCCTACCTGGGGGGAGACTTCAACGCTGTGGCAAAGTTGAGTGGTCTTGTGGATGCCTCTAAAAACTGCGAGCAGTTTATCAAGTACGAGTGTTACAATTCTATTCTCTTCAGGTCTAACCCAATTGGCTGGTGGGTGTCACGTAACTTTGAGAAGATGACATACTGGGGTGGAGCCACGTCAGCAGATTCCCTCAAGTGCGCATGCGGAGTAAACTCGCCCAATTCATGTGCAGGAAACTACGGATGTAACTGCGATATTAATGACAGCAAATGGCGCGAGGACGAAGGTTTGCTCAAAGAAAAGTCTGATCTTCCAGTGTTACAGTTGAGGTTTGGAGATACTGGAGACAACGGTGAAAAAGGATACTATACTCTGGGAAAACTCCGATGTTTCGGAGAAGAGTGAAATGGATGGGAAAACTGTAGAACCGTTCAATGTTTAGTTAGCGTGGAAGCTCTTTTGTAACAGAGGGCAGTGGTTCATGAAAAAGAAATGCTGAACTTCCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13592	HTH_33	Winged helix-turn helix	Domain	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR025959	Domain	Winged helix-turn helix domain	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46564	TRANSPOSASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan