Gene detail

Detailed information of anas_s0022.g46.t1 in Acropora nasuta

Genomic Location: sc0000022_pilon:578165...585565
NR annotation: XP_044180731.1, uncharacterized protein LOC122961921 isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

anas_s0022.g46.t1

ATGTCTTCAGTCGTTGGCCATGCTCAGAAATTGTGCTCAACGATAAGGTACAATCCAAATTCTCTGAACCGCACTGTAGCCATCATTGGAATTATGGAGGAGGGCAGCAAAGATGACTTTGGCTCCTATGGGTTAAATGACATCATTTATCAACCAGTGACTGATAAAACCATGAATCAAGTGTTGCTAAAATGGGCTGGACATAAGTCATGTGAAGGAATGCCTATGACTCCATCAAGTCCGGGAGATAGAGTTCCAGTAGTAGCAGTGATGAAAGCGACAGAGTCCATCAGGGAGAGTAAACAATCATCAGCATCACTTCCAAACTATAATAACAACCCTGATATATCACCTTCAGTTCAACAGAGTTGCAACAGTATTTCTGAGGCTGATAATTGTGTGACTGAGTCTTATAAACCCTCCCAACTACAGCTTAACCAAGCAGTAGCCTTTCACCCGCAGTCTTATAACAGTGTACAAGGTGGCAGTGGCAATGGAATCCCAATTTCCAATAGAGGCTTGGCCAGTCTGGCACAGAGTCATCTCACAACAAACGACAGTGGGCTCGGACAACTTCCTCACACCCAAGTCTCATCAAGCATCACAGCACTGCAACACTTTGTTCAGGGAGGTTATCCATGCCAAGATCAACAGCCACCATCTCTGTTTTTGTCAAGGTCAGCACCAGATCATATTCCAGTTCACAGTGGGCTTGTTCCTGCTCACATCACCAGTATGGTCAATGCAGTTTATCCACCAGAACACTCCAACCAAAGCTTCATCTATCACAGCGCTCAGTCCTTAGAGTCCAGCAAACTGAACACTGCTCCTCATTTTGTTCCCATCAATTCAACATCACACCATTCAAGTGCACACAGTTCAAATTCAGCAGGATTTGGCTCTGGTCAAGATGCTCCTAGTTCATCAAAGGCCGAACAATCTCCTGTATCATCAACTCACACCACCACTAATTCCACAAGCAACAAGGGAGTTGGCAGTCCTGCCTATATGATAAGTGGTGCGCTTGGAAGCAAGGATATGAAAATCACACTGTTGCATGAGGACATGTCTAAACACAGCTCCAAAGAACGAATTAGAAGAGAACGCATCAAGGACAGTTGTGATCAACTCCGTTTCTTGTTACCAAGTGTTGCAGGGAAGAAATCTGATATGGCTTCAATCCTTGAAATGACTGTGAAGTATGTTCGAATGGTCAAAGAAAGGCTGCCACCTCCTGTGCTTCAAGAGATTTCAGACAATATCATTGACACTTCTCCTGTACTCCCAAGAAAAAGATCAAGAGACACCTCTGGTAGTGTAAAACAGGGGAGGCCAAGACTCACACCCACATCAAGCATCCCGACAATTCATGATGGGGCACCAAGACTGGCACATCCTTTGCAGCCATTTTACATGCGGCCAGCACCATTTCAGCCAAAAGCTCCAACAATAGTCACAACAACAGGTCCGATGTACGTGCCACACCTGCACATGCGACCTGGACATGAACACCCACAGATTCCTCTGCAACAACACATTGTACACCCTCCAGAACCTGCTGGCTTCAGAACAGTTGCATCTCCTCCATCTGCATTCAACAGTTGCAGTGCAGCCCGCAATGTCAGGAATGCTAATGTAATGCAACACATTCCACCCCATGAACACACCACCATGAACCTACACCAAGATTGCTCTGCACCTCTCAGCACCTTTCATTCCAAGCACATGTACCATAGCAGTCATCAAACAGTGCCAACGAGGGGCCACAGCTACGATATACCACAGCAATGGAGCTTCTTAAAGTTACCAGCTATTGGAAATATTTTTCACTCATTGAGTTCTACTACTTTGAGTACTGGAAATTCTGAGGCAGATTCATGTGACTCAAACACTTCCTCCCCGAGTAATTCTTCTTCAATGACACCACCACTTTGGGAGAATAGTGGAAGCATGATAGGTAGCAGAGTAGATCAAACTCATTTGGAAAGTCCAACACTTTATAAAGGTACTTCTGTATAA

Transcript

anas_s0022.g46.t1

NNNNNAGAGATGCAAGTTAAAAGTTGTCACAGTGCAGATTTGATTTCAATTTGCACACAAGAAATATTTTTATTAATCTTTCTGGAGATGTCTTCAGTCGTTGGCCATGCTCAGAAATTGTGCTCAACGATAAGGTACAATCCAAATTCTCTGAACCGCACTGTAGCCATCATTGGAATTATGGAGGAGGGCAGCAAAGATGACTTTGGCTCCTATGGGTTAAATGACATCATTTATCAACCAGTGACTGATAAAACCATGAATCAAGTGTTGCTAAAATGGGCTGGACATAAGTCATGTGAAGGAATGCCTATGACTCCATCAAGTCCGGGAGATAGAGTTCCAGTAGTAGCAGTGATGAAAGCGACAGAGTCCATCAGGGAGAGTAAACAATCATCAGCATCACTTCCAAACTATAATAACAACCCTGATATATCACCTTCAGTTCAACAGAGTTGCAACAGTATTTCTGAGGCTGATAATTGTGTGACTGAGTCTTATAAACCCTCCCAACTACAGCTTAACCAAGCAGTAGCCTTTCACCCGCAGTCTTATAACAGTGTACAAGGTGGCAGTGGCAATGGAATCCCAATTTCCAATAGAGGCTTGGCCAGTCTGGCACAGAGTCATCTCACAACAAACGACAGTGGGCTCGGACAACTTCCTCACACCCAAGTCTCATCAAGCATCACAGCACTGCAACACTTTGTTCAGGGAGGTTATCCATGCCAAGATCAACAGCCACCATCTCTGTTTTTGTCAAGGTCAGCACCAGATCATATTCCAGTTCACAGTGGGCTTGTTCCTGCTCACATCACCAGTATGGTCAATGCAGTTTATCCACCAGAACACTCCAACCAAAGCTTCATCTATCACAGCGCTCAGTCCTTAGAGTCCAGCAAACTGAACACTGCTCCTCATTTTGTTCCCATCAATTCAACATCACACCATTCAAGTGCACACAGTTCAAATTCAGCAGGATTTGGCTCTGGTCAAGATGCTCCTAGTTCATCAAAGGCCGAACAATCTCCTGTATCATCAACTCACACCACCACTAATTCCACAAGCAACAAGGGAGTTGGCAGTCCTGCCTATATGATAAGTGGTGCGCTTGGAAGCAAGGATATGAAAATCACACTGTTGCATGAGGACATGTCTAAACACAGCTCCAAAGAACGAATTAGAAGAGAACGCATCAAGGACAGTTGTGATCAACTCCGTTTCTTGTTACCAAGTGTTGCAGGGAAGAAATCTGATATGGCTTCAATCCTTGAAATGACTGTGAAGTATGTTCGAATGGTCAAAGAAAGGCTGCCACCTCCTGTGCTTCAAGAGATTTCAGACAATATCATTGACACTTCTCCTGTACTCCCAAGAAAAAGATCAAGAGACACCTCTGGTAGTGTAAAACAGGGGAGGCCAAGACTCACACCCACATCAAGCATCCCGACAATTCATGATGGGGCACCAAGACTGGCACATCCTTTGCAGCCATTTTACATGCGGCCAGCACCATTTCAGCCAAAAGCTCCAACAATAGTCACAACAACAGGTCCGATGTACGTGCCACACCTGCACATGCGACCTGGACATGAACACCCACAGATTCCTCTGCAACAACACATTGTACACCCTCCAGAACCTGCTGGCTTCAGAACAGTTGCATCTCCTCCATCTGCATTCAACAGTTGCAGTGCAGCCCGCAATGTCAGGAATGCTAATGTAATGCAACACATTCCACCCCATGAACACACCACCATGAACCTACACCAAGATTGCTCTGCACCTCTCAGCACCTTTCATTCCAAGCACATGTACCATAGCAGTCATCAAACAGTGCCAACGAGGGGCCACAGCTACGATATACCACAGCAATGGAGCTTCTTAAAGTTACCAGCTATTGGAAATATTTTTCACTCATTGAGTTCTACTACTTTGAGTACTGGAAATTCTGAGGCAGATTCATGTGACTCAAACACTTCCTCCCCGAGTAATTCTTCTTCAATGACACCACCACTTTGGGAGAATAGTGGAAGCATGATAGGTAGCAGAGTAGATCAAACTCATTTGGAAAGTCCAACACTTTATAAAGGTACTTCTGTATAAAACAAAGCTTGGAAGAACTGCATTGGTAGTAAAATAATAAAGAGAAAAAAAAACTAGCAACTGGTAGTAAAAATTGGTTGACAACACCAGAAATAACATTGTGCTTTATCACATCAAATTGTAGTTTTAAATATGAACAATACCATCATAAAAGTTTTGAATGCACAAGAACATAAGAGTTTTTAGGATTTGAGGATTACCTGAAGGTAATGGACAGTTGGCAGAGCACAAATTTTTAACATGATTAGGCAAAATTGGGAACTTTTATGTGAAAAGAGCAAACAGCTCAGAGGTTAAATGTCTATGGTACTGTATATGTTTTAAACTCCAAGCTTCTATTGTCACATTGTGTTCTGGTTTGAGAAGGAAATAGGGTGATCAGATTTTGCAGCAAAAATTCTCTAGTATTATTCAATATAATTATTTTTTTTTTAACTGACTACACTTACATGCAAATTATTTTGTCTGATTGCATTAATACAGAAttaagaaggtacaacagccactgcaatgaaaacatttcctaaaaatagagttttgcatttggtgaagcatttggggattattctatgttggtcaagttgtacaaaatgatcaaagtgtcctttcatctgattggcacaaagggttttcatgtaaaggcagagaatgaaaaatttattgctgtgggctaacactgtcatcagaacctcgaatctgaaaattgaaaatcgtcatttgacacattatgtcaaagaaatgcacttaaatgaaagctgtatgggcagcgtgattagttcctcaatccaccaatcatataattgatttgtgtcgttgctgttgtcatCAATTCAAAATTCCTAATCACAGGTTGAAGAAAAGCATTTTTGTTTGGCTCCAAGGTGTTCAGATAGTACCTCACTGATAGTACAGGGTACGATGTGCAGCATTTTGTGAACAAGCTTTATAGCTGCCCAACAACAAAGCCTTTTTTGACGGACAACAAAAGGGATAAAATTTAATTCAATAAGAATTTTTTTTTCTTTGAGCAAGTAGTGAAAATGTAGGTTGGGAGTTGTGAGCCACATTTTTAAGGGAAGGTTAAACTAAGTCATGGGAATCGAGAAAACGTTAAATTATGCTCAAGATGAAGATGCAGTTTGCATGCAGTAATGATTCTGTCAAGAGCCTTGCAAGAGATGTTGTGTTGAATTTAACATTGTTGTAAAACGTTACAAAAGTATATTGTTTATGCCAAATAAATATTTCATATTTGA

Protein

Uniprot

Gene family

Uniprot term	Description
Q9NX45	Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens OX=9606 GN=SOHLH2 PE=1 SV=2
Q3MHT3	Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Sohlh2 PE=2 SV=1
Q9D489	Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Mus musculus OX=10090 GN=Sohlh2 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR039583	Family	Transcription factor-like 5/SOLH1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15402	TRANSCRIPTION FACTOR-LIKE 5 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0007283	Biological Process	spermatogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15157	MED15; mediator of RNA polymerase II transcription subunit 15	-	Transcription machinery	ko03021	deepkoala