Gene detail

Detailed information of anas_s0047.g96.t1 in Acropora nasuta

Genomic Location: sc0000047_pilon:1577535...1582908
NR annotation: XP_029212748.2, paired mesoderm homeobox protein 2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

anas_s0047.g96.t1

gtttaacggtaacgcaaagacacatcattaaatctttcattcgatttcccagaatttgtttcaacagctttcctaacagtccatttgaagcgcgcctttccaatagggtagaataccagaatgaagcaacaatcgcacaatagccactattgcccaagtttttgtttagaagtgtagttttttgctgctgtagtcgttactgtcaaaagtccctaGTATCTGTTCTGCAGTTGTGTGGACAACGTATAATTATAAGCGTCCAACCACAGCTTTTGTTTTCTTTTTCTAACTCCAAACCGTTTTAATCGCAGGATAGtaaggggcagaatcaatgccatcaagggcaaagacaacgccacaaatcaaaaatttgattggcccaatttgatgaataagcgcgccgtacgtgcggcacgcccttaagaactgttgaactattccgtgctttctctgcaaataaccacgtgaaattatcacatttgcggttttcacgacaaattaaacaaacaactgcaaatcgtgaaaattctctttctttttcaacgacgcctgctgcagaagagatgaagcgtacttcgcaacactgtattatttgaacaagTGATTGACAGCTGCAAAAGTATAAATCATAGTTGAAGACAGAAAAGCATCAAATTTGCTTGGTGTTCACTCAAACAAGTTCAGTAATTTCTCTTGATGTGTGCAATGGGAACCCGAGTTATGCCAGTTTGTGTATTGGACAAATCACCCGTCAAAAGATCGCCCAGTGGTACTCACTTTCCGCTGTCCTCGAGTGCAGTCTCCGGTCAACGGTTGTCCTTCTCCATCAGCAAGATCCTTGGTCTTGAAAGTGACTCATCTCTTCGTCAAAGTTCACCAAACTCTGTTCCCAAACGACCTTCAAAGTGCTCTCCAAAATCTTCGAATTTCGCTTTGGATTTTACATCTTCCAGCAGTGAATGCGACAGCGAGCCCGATCAAGTACCGACTGATTCCGAAAAGACGTCGAAGAAGAGGCGACAGCGCACGACTTTTTCAGCTCATGAAGTGTGGGCAATGGAACGAGCGTTCAAGCAGTGTCCATATTTGCTGCGAGACGATGAGATGCAGCTTGTCTACAGACTTGGGATTCCTGCCAAAAGTGTGCGATACTGGTTTCAAAATCGCCGAGCAAAATCAAGAAGGGAAAAGAGTTCACAATCCCAAGCAGTCGTCAGTCAGGACATCGTGTCAAACGAGTTCAAGCGTCCAGTGACTTTCAGTAAGCACTCGGTCCAGTTTCCTCCGTACACAACTGCTGTGAGTGACGTAGCTGACATCAGAATTGAACGAGTGTGGAGCAAAGCGGGGACAAGCCCGAGAGATCAGCCTCGATTCCAGCCAAGAGTGGTCGAGGATTACTGCCTACGTGAACCATACCTAAATGATAAGCTGCGCTCTAAGCTGCAGATGGAATATGGGTTGCCCATGTTTCACCCTGATCAGCTCAAGAACAGAATACAAGCCGATCCCACGAAGAGGCGATACAGCCGTTCTTCAAAGAGACCTAAGCCGTACTAAAAGTCGTTTTCGTGGTTTCCAGTTTTCAAAGTTAATCGTTGTAGATCATTGTAAAGATAGTTTGAAATATGAATTTTAACCCAAATGGCTTTCAAAAAAGCCTAAAGACGTATTACCAAGGATTGGAAAGTTTGTTGACTATTTTTGTTTCAAGTATGAAATAAATGATTGGATTAAATATGTTCGCGTCACTTTTACTCATTTCATTTATTTTGAAACTGATTGAAAACACGTTAGACTTTTGCCTGTTCTGGAAATCGTTAAAAATTAACAGTCAAGAAAGCGCACCGTTTAATTAAGTAACGAAACCACTTCTTGTTTACAGTCAGTTACTGCGTGTTTTCACGCGTGCTGTAATTGTGATGGGTGAataattgagcaatagaccacaagtttctatggtttataggcttttatataataattcagaagacgcgcgatttttccatgggtttaccggcacaataaaccatagctgatttgaccaatcagaacgcgtggattgattttgttattgtataaaCTAAAATAATATATATCGTGCGACTTCACTAGGTATTTGCATATACGGATCATGAGCCCATTTCTAGGCCAACTAtgtatttgagttatttcttagcagaggatcatagaccttacttttatgtctccttgatgagtatgacttggttgatactcaatggcctttgttatccacatttctcaccacaagcaatggtcaaattatcaaaaaggctgtaggactttgtgaaccttgtttaagtcggcatgcatctaattgagtgcaatcctggaAGTGCAGTCATAACATTAAACTTTTATAACAAAAATTCATTAAGCCAACGTGatagttactagatggcttaccctgcaaatagctggaaaaagctcattgaggcagggcaagccaaatacaagaaccccctattttaaaaacaataaatttacacaactacacttaatctaacaaattaacgatacagattacaagaggattgattatCACTAAATAATATAAGAAAGAAAATAGT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050394	Family	Homeobox NK-like transcription regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24340	HOMEOBOX PROTEIN NKX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08029	NKX2-2; homeobox protein Nkx-2.2	-	Transcription factors	ko03000	deepkoala