Gene detail

Detailed information of anas_s0088.g15.t1 in Acropora nasuta

Genomic Location: sc0000088_pilon:478811...516223
NR annotation: XP_044165878.1, receptor-type tyrosine-protein phosphatase mu-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

anas_s0088.g15.t1

ATGATACGCCTACATGTTCAAGTCTTCTTGGATAAGatctttaacggaaatagtggaagggaggatgttgtaaaacatagtcttacgagttttaccagggcgaggtttgtcaggttccagccgactgaaagtcataatcggaaggcgctgagagtggaaatctacggtgttcctgcacccgcaggcccaaatcaatctccaagcaattttattctctcacctcttaactctacaagtgtggtcgcctcttgggcattgccatctgcaaggtccatacaaggaataaagctgctgtacaaaattaagaacacagattcttcattcattgctaaaaccatcactggcaactcgagtcttagcacaagtattactggccttgggaaattcacagagtatgaatttcgcgtgctggcgtatacagctaatggcaatggaccactcagcccggtaaaactagtaaggacaaatgaagacgtaccctctgatggtccaacaagcatttcttttgacgaagagaatcaaaccagtttcaagatctcctgggctccactagcaagagagaagaggaatggcattattgttggacacgaaattaaacatgaaaaggcatcaaccgaagcaagatccaaacgatccattggagacaccacctacagcaactcggcaaacaactttgccctcgtaactggctttcaaccgggttgcaactatagtatatctgtgcgtgctttcacttcagctggaggcggaccctttggcgaagaaaagacactaaaaatctcaaattcagtacctccctactgggaagtgaagccgatcacaagtacagaggtagaactcaactggataaacccatcactccgcccaacagaggtttccaattacacgTTTACGTATAGTGGAACTGAGAATGATAGTGTTTCGTTAAATGTTGGAAGTCCACCATCTGAGCAGTATTCAGTAACAAACCTGGTACCAAACACACTCTACAAGTTCTACTTTGATGGGACTTCCTCTTGCGGACAGAGCCTGTCACAGATAATAGAAGCTAAAACAGAAGCATCTAAGGGAGAAAGCGGAGCATCCCAGGAAGAATCAAATTCCATTTCCGCAGCTGCTATAGTTGTACCAGTCGTGCTAATAATACTTCTTGTGGTACTGGCTATCCTTGGGGTATTGTTCTATCGCAGGAGGAATAACAAAAGGTCGTCCAGAGGAAACGACAGGGTTCATCTCAATGTTCCTCCAAGTAGCACCTCTAATTCCGCACCTCCTACAGATGCTAACACTTACGAAAATCCTGAAGATTTTAAAGGAACAAATGGACTAGATGGCAGTCATAAACCACGCAAGGAGATTTATCAAAATGCAAACGTTAGCGCTCCGTTGGAACAAGCTGATCTCGTTTACCAGAATATCGCAAGAAAGCAAAAGGGCCTGGGGCAAAGCCCTATTAAAGAAGTTGCCCCACAAGAAGAACCAGTGTATGAAGAAACTAATGACGGCGATCCAAAGGCCATTCCCGTGGATAAGTTTGCGGAGTACTTCAAAAGCAAATCAAGGGACGGTGGAATACTGTTGAGAGAAGAATTCAAGAAATTGTCAGGTGGGATGCTGGCATCCTGGAAAGTGGCACAAGCTTGCAAGTCAAAGAATCGTTACGGAAACATAGCCTCGTATGACCATTCCCGAGTCATACTGGAAGAAATAAAAGGGAAATCAGGGTCTGATTACATCAATGCAAGCTATATCCCGACTTATGACGAGGAGACGATGTGTTACATTGCTACGCAAGGTCCCACATCTGTGACAGTGAGCGACTTTTGGCGGATGATGTGGCAAGAGAAATGCTCAGTTATTGTTATGCTTACCAACCTAGTTGAACAAGGAAAGGCAAAATGTGAGCAGTATTGGCCAAACGATACTTCTGAATATGGCGGCATTAAAGTTACTTTGCTCAAGACAGAAAACTTTGCAAATTACGTCATTCGTTCGTTTTTTGTTATTAAGGGCTCTGAGAAGCGCGACTTATTCCAATTCCATTACACAACATGGCCCGACAGAGGTGTACCTCAAAATTCTACTGCTTTGCTAGCATTCAGATGGAAAGTGTATGCTCGGCAACAATTGACTGAAGGACCACTTGTTGTACACTGCAGCGCCGGCGTTGGTCGAACAGGAACCTACATTGGCATCGATGCCATGTTGGAATGTGCTAAAGACAGGGGCAACGTGTTTATTCAAAATTACGTGGAGGTCATGCGCAGACAGCGTCCTTATATGGTTCAGAAAGAGGAGCAGTATGTGTTTTTGCATGAAGCCGTGATGGTGGGATTAGCTTGTGGAAATACAGAAGTTTCTTCCGAAGATTTGCTGCTCAGAATGAACAAACTTACAAGAGTTAATAAGTCTTCCAATCAAACGGGATATCAAGAAGAATTTCAGCGGTTACAGAAACAAACTACCAATTATAATGAATCTGCAGTTCTACTAAGCATTCCTGGCTACGTCTTTGAGTGTGCTCCAACATCAACAGCGTGTGGAGGTGCAAGCCTTTTTATTGAAGAAACCCTTGGTTACATAATCCTAGAGGCGACTTCGATTGAATCTTTCCAAGCGTTATGGATCGATGTTCGCTTCATCACAAAGAAAGGTGTGATATCGACAACACAATTTAGCAGAGAATTTTCTTACTGA

Transcript

anas_s0088.g15.t1

CTACAAAAAAAGTCTCGGTATTTTATGATACGCCTACATGTTCAAGTCTTCTTGGATAAGatctttaacggaaatagtggaagggaggatgttgtaaaacatagtcttacgagttttaccagggcgaggtttgtcaggttccagccgactgaaagtcataatcggaaggcgctgagagtggaaatctacggtgttcctgcacccgcaggcccaaatcaatctccaagcaattttattctctcacctcttaactctacaagtgtggtcgcctcttgggcattgccatctgcaaggtccatacaaggaataaagctgctgtacaaaattaagaacacagattcttcattcattgctaaaaccatcactggcaactcgagtcttagcacaagtattactggccttgggaaattcacagagtatgaatttcgcgtgctggcgtatacagctaatggcaatggaccactcagcccggtaaaactagtaaggacaaatgaagacgtaccctctgatggtccaacaagcatttcttttgacgaagagaatcaaaccagtttcaagatctcctgggctccactagcaagagagaagaggaatggcattattgttggacacgaaattaaacatgaaaaggcatcaaccgaagcaagatccaaacgatccattggagacaccacctacagcaactcggcaaacaactttgccctcgtaactggctttcaaccgggttgcaactatagtatatctgtgcgtgctttcacttcagctggaggcggaccctttggcgaagaaaagacactaaaaatctcaaattcagtacctccctactgggaagtgaagccgatcacaagtacagaggtagaactcaactggataaacccatcactccgcccaacagaggtttccaattacacgTTTACGTATAGTGGAACTGAGAATGATAGTGTTTCGTTAAATGTTGGAAGTCCACCATCTGAGCAGTATTCAGTAACAAACCTGGTACCAAACACACTCTACAAGTTCTACTTTGATGGGACTTCCTCTTGCGGACAGAGCCTGTCACAGATAATAGAAGCTAAAACAGAAGCATCTAAGGGAGAAAGCGGAGCATCCCAGGAAGAATCAAATTCCATTTCCGCAGCTGCTATAGTTGTACCAGTCGTGCTAATAATACTTCTTGTGGTACTGGCTATCCTTGGGGTATTGTTCTATCGCAGGAGGAATAACAAAAGGTCGTCCAGAGGAAACGACAGGGTTCATCTCAATGTTCCTCCAAGTAGCACCTCTAATTCCGCACCTCCTACAGATGCTAACACTTACGAAAATCCTGAAGATTTTAAAGGAACAAATGGACTAGATGGCAGTCATAAACCACGCAAGGAGATTTATCAAAATGCAAACGTTAGCGCTCCGTTGGAACAAGCTGATCTCGTTTACCAGAATATCGCAAGAAAGCAAAAGGGCCTGGGGCAAAGCCCTATTAAAGAAGTTGCCCCACAAGAAGAACCAGTGTATGAAGAAACTAATGACGGCGATCCAAAGGCCATTCCCGTGGATAAGTTTGCGGAGTACTTCAAAAGCAAATCAAGGGACGGTGGAATACTGTTGAGAGAAGAATTCAAGAAATTGTCAGGTGGGATGCTGGCATCCTGGAAAGTGGCACAAGCTTGCAAGTCAAAGAATCGTTACGGAAACATAGCCTCGTATGACCATTCCCGAGTCATACTGGAAGAAATAAAAGGGAAATCAGGGTCTGATTACATCAATGCAAGCTATATCCCGACTTATGACGAGGAGACGATGTGTTACATTGCTACGCAAGGTCCCACATCTGTGACAGTGAGCGACTTTTGGCGGATGATGTGGCAAGAGAAATGCTCAGTTATTGTTATGCTTACCAACCTAGTTGAACAAGGAAAGGCAAAATGTGAGCAGTATTGGCCAAACGATACTTCTGAATATGGCGGCATTAAAGTTACTTTGCTCAAGACAGAAAACTTTGCAAATTACGTCATTCGTTCGTTTTTTGTTATTAAGGGCTCTGAGAAGCGCGACTTATTCCAATTCCATTACACAACATGGCCCGACAGAGGTGTACCTCAAAATTCTACTGCTTTGCTAGCATTCAGATGGAAAGTGTATGCTCGGCAACAATTGACTGAAGGACCACTTGTTGTACACTGCAGCGCCGGCGTTGGTCGAACAGGAACCTACATTGGCATCGATGCCATGTTGGAATGTGCTAAAGACAGGGGCAACGTGTTTATTCAAAATTACGTGGAGGTCATGCGCAGACAGCGTCCTTATATGGTTCAGAAAGAGGAGCAGTATGTGTTTTTGCATGAAGCCGTGATGGTGGGATTAGCTTGTGGAAATACAGAAGTTTCTTCCGAAGATTTGCTGCTCAGAATGAACAAACTTACAAGAGTTAATAAGTCTTCCAATCAAACGGGATATCAAGAAGAATTTCAGCGGTTACAGAAACAAACTACCAATTATAATGAATCTGCAGTTCTACTAAGCATTCCTGGCTACGTCTTTGAGTGTGCTCCAACATCAACAGCGTGTGGAGGTGCAAGCCTTTTTATTGAAGAAACCCTTGGTTACATAATCCTAGAGGCGACTTCGATTGAATCTTTCCAAGCGTTATGGATCGATGTTCGCTTCATCACAAAGAAAGGTGTGATATCGACAACACAATTTAGCAGAGAATTTTCTTACTGAATATATTGAGGAGGCAACAGAGAGATACGTGCTGCAGGATCATCCAGTTCAATATCAAGTATAAAAGACGAATGCACAG

Protein

Uniprot

Uniprot term	Description
B0V2N1	Receptor-type tyrosine-protein phosphatase S OS=Mus musculus OX=10090 GN=Ptprs PE=1 SV=1
Q64605	Receptor-type tyrosine-protein phosphatase S OS=Rattus norvegicus OX=10116 GN=Ptprs PE=1 SV=2
F1NWE3	Receptor-type tyrosine-protein phosphatase S OS=Gallus gallus OX=9031 GN=PTPRS PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050713	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:1990264	Biological Process	peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan