Gene detail

Detailed information of anas_s0096.g21.t2 in Acropora nasuta

Genomic Location: sc0000096_pilon:382976...401949
NR annotation: XP_044176440.1, inner nuclear membrane protein Man1-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

anas_s0096.g21.t2

ATGGCGGCCAAAGAGAGTGCTATTTCTGATGGAGAATTGCGCCGAAAACTCACAGCGTTAGGCGAAGATGTTGGACCCATAACTCCCACGACTAAGTCTTTTCTAATGCGAAAATTAAAACGCTTACAGAATGAAGCAAAAACCAGCAGGGGAAGCAAAGAAAAGACGCCATCTAAACGAGGAACCTCACCATCTCTTAAGCCGCGATCTTCACGGGCACTTTCTAGAACTCAGAGCCCCTCTCGTAAATTCATTGGATTTTCCAGTGATGAAGAAGACGCTGGGCCAAGCCTCTCGAGTACTTTCACGGAATCGGGTAAATTGAGGTTTAAACGAAGAGGACTGATGAACAGCAATGATGATTTGCCTGAGGAAACATCCTCCCAGAGTACGCAACCTTCTCCTTTGAGGCGCAGAAGTTATGACCGTGTGCCAAGTTTAATGGATAACTTTTCTGAGAGGACGTTATATACAACGGAAGGAAATAGCGGAGAGTTTTCTGATCAAGATGGACAAGTGCCCCATCAATCAATAAGCAATTCATGGCGCAGAACTCCAAATCGCGATCGAGAAGAGAGGGAAAGACCATTCCTGAAAGTGCGTGCTTCCTCAACCTATGACACAAAGGAAAGCGCGACTGTTGATTCCAAATTAAACTCGACACTTCGAGAGAGACCAGCTGGAGCCGAAGTCTTGAAAGGCAGCTCAACGTGCTCTTCAACAGGAAAGATCGTATTGGTGATAAGTGGAATCTGCGTCGTTCTGCTGTTGTGCGCCGCTCTCAAGTGGCACTTGAATTACCAACAGCCGCAACTAGTGACGCTCCCCCTTTGTAAAGAAGAGAATAGTTTGGTTAAATTTCGTCTGGGTGATAAGCCCCTTGAGTGTGCGCCAGTACTCAATATCAGCCAGCAATATGCAGCCTTGTTGTATGAACGGCTTTCAGAAAAAGCAGGGTTATGTGATTGCGAATATGCCAGCTGTGACAGTAGGAACTTGTCTCGCAATTCATTTGAAAAACGAGTCAGGAATGATAATTCTAGCAGAAAAGTGGAGGACCAAAACTGGATCTTGAACACAACACTGGAATTAATTCTGAATGATTCTTATTGGAAATTAAGGTTATTTGACGAGAATGACACAGCAACAGATGATATCAGTAAGGTGAAATGGATTGATTGTGCTGTTTCAATGAAACCTTTATTATGCCGCATCAGGGAAGCAATGTCCCGGTTGGCTTATCTATCATCTGCTATTGGTTGTGTTATCGGTGGCCTGGTGTTTGTTTATTTCGTTGTACGTCAAAGATGGAGGAGAGAAGAACAAGAAACAAGAATGATGTACCAGTTTGTGGAGAAAATTATTGAGATCTTACGAGAGCACCATCAAGCCAGTAAAACTGAAAAGACCTTGTTGCCTTATCTTCCAATTCCTCATGTTAGAGACATGCTGATTCCTCCATCTGACAGGCAAAGATTGCTTGGTGCCTGGAATAGAGCTGTCCGATTTTTGAGTGGCAATGAGTCTCGCATTCGAGTTGAGAGCCAAAGAATCGCTGGGGAAGATTTTGAAGTTTGGAGGTGGATCCAAGTTGCCACGCCCAAAGCCCACAGCCCAAAATCGGGCAACAAGCGTGGAAAATACTGGCAGGGACAAGCGTTTGAAAACTTTCAATCAGCTGTAAACCCACCTGTTATTAGTCCAACGCCATGTTTGAAGATACGAAACATGTTTGACCCCGCTGTTGAAACTGAAGATGGCTGGCACGTTATGATCCAAGATGCCATTTTGGAGAAGTGCATCGAGAACGGAGCTGGCGTAGTCCATATTGCCGTTGATAAGAGTTCTGTCGAGGGATGTGTTTATGTCAAATGTGATACTCATCACTCTGCGGGGTTGGCCTTTCGAAGTCTTCATGGCTGTTGGTTTGATGGTCGACTTGTTGCGGTGAAATACCTTACCCTTAAGAGATATCATCAGCGGTTTCCCGTTGCCATGGAAGCCACCGAACGGATCAATCCATCTGGGACCTCCCCGTCGTCGCTTGTTGTATTTGATCCCGCTACTGGAGATGAGGATGTGAATGATTCTGATATTGAGCTTTAG

Transcript

anas_s0096.g21.t2

GTGGTACGATAAAGAAAAGTAAAATGTCAGGAGATGAACTTCGTGATGTCGAGGTACAAATCCGCGGGGACGACATGGAAGCTAAAAACGGACATCAAATTAGCCTTAGCGATAGAGATCCAACTGCGATGAATGATCATGTAAAGGTATTTTTCCAAGACGTGTTCGCAGAGCCAGAAGGATCCTACAGTATAGATGGAGTTTGGCGCACTAGCTTTACTGCATTTGTCAACACCAAGTATTGGTGTTACCGCATCATAACAGCCGTCCTCGGAATTCCTACCGCGGTGCTCTGTGGGATGTACTTTGCTTGTCTCAGCTTCGACTACATTTGGTGTGTGATGCCCTGTTTGAGGGCCTACATTATCGAACTGCAGTGTCTAGGAAAGATATTCGGACTTTGCTTGAGGACATTTTGCGATCCCTTTTTCGAATCTGTTTCCCGGATTTTCAGCGGAATTAAAGTTATGTCGCAAAAAGCGTAAATGAAGTTTTTTAAGTATGAGACATTTAGCGACGTGAGCAAATCGTACAGGCATGTTTGAACTTTTTTCAATCTTGTATTTATTTTTTAAAATTTAACAATAACTAAAACATTTGTACCTTTTCATTACCCATTATGAGAGGGTCGAAATGGACAGTTAAGTAAAGGTAACTTTGAGTCAATATTGGCTTGTAATCATTCCAAAAATTAGGCAAACGAACTCTCCTCAACAAAGCAATCATCTCAAGGTCACGTCTAGTCATGTAATGAAACTGAAATCGATAAAATGGAAAGGTTATTCAATGGACGTCTTTGTGGGCCCAAACGAGATTCTTAAACCTTCTTTCCTAAAAGGTACGAGTGGaaaaaaacaagacaaaacaaattaaaacaGGTTAAATTCTTGAGGTGGGTTGCAGAGCAGCGGTTTGTCCAACCAGGTAACCTCGCCTGATCAAGAATCCTTGGAACATGGCGGCCAAAGAGAGTGCTATTTCTGATGGAGAATTGCGCCGAAAACTCACAGCGTTAGGCGAAGATGTTGGACCCATAACTCCCACGACTAAGTCTTTTCTAATGCGAAAATTAAAACGCTTACAGAATGAAGCAAAAACCAGCAGGGGAAGCAAAGAAAAGACGCCATCTAAACGAGGAACCTCACCATCTCTTAAGCCGCGATCTTCACGGGCACTTTCTAGAACTCAGAGCCCCTCTCGTAAATTCATTGGATTTTCCAGTGATGAAGAAGACGCTGGGCCAAGCCTCTCGAGTACTTTCACGGAATCGGGTAAATTGAGGTTTAAACGAAGAGGACTGATGAACAGCAATGATGATTTGCCTGAGGAAACATCCTCCCAGAGTACGCAACCTTCTCCTTTGAGGCGCAGAAGTTATGACCGTGTGCCAAGTTTAATGGATAACTTTTCTGAGAGGACGTTATATACAACGGAAGGAAATAGCGGAGAGTTTTCTGATCAAGATGGACAAGTGCCCCATCAATCAATAAGCAATTCATGGCGCAGAACTCCAAATCGCGATCGAGAAGAGAGGGAAAGACCATTCCTGAAAGTGCGTGCTTCCTCAACCTATGACACAAAGGAAAGCGCGACTGTTGATTCCAAATTAAACTCGACACTTCGAGAGAGACCAGCTGGAGCCGAAGTCTTGAAAGGCAGCTCAACGTGCTCTTCAACAGGAAAGATCGTATTGGTGATAAGTGGAATCTGCGTCGTTCTGCTGTTGTGCGCCGCTCTCAAGTGGCACTTGAATTACCAACAGCCGCAACTAGTGACGCTCCCCCTTTGTAAAGAAGAGAATAGTTTGGTTAAATTTCGTCTGGGTGATAAGCCCCTTGAGTGTGCGCCAGTACTCAATATCAGCCAGCAATATGCAGCCTTGTTGTATGAACGGCTTTCAGAAAAAGCAGGGTTATGTGATTGCGAATATGCCAGCTGTGACAGTAGGAACTTGTCTCGCAATTCATTTGAAAAACGAGTCAGGAATGATAATTCTAGCAGAAAAGTGGAGGACCAAAACTGGATCTTGAACACAACACTGGAATTAATTCTGAATGATTCTTATTGGAAATTAAGGTTATTTGACGAGAATGACACAGCAACAGATGATATCAGTAAGGTGAAATGGATTGATTGTGCTGTTTCAATGAAACCTTTATTATGCCGCATCAGGGAAGCAATGTCCCGGTTGGCTTATCTATCATCTGCTATTGGTTGTGTTATCGGTGGCCTGGTGTTTGTTTATTTCGTTGTACGTCAAAGATGGAGGAGAGAAGAACAAGAAACAAGAATGATGTACCAGTTTGTGGAGAAAATTATTGAGATCTTACGAGAGCACCATCAAGCCAGTAAAACTGAAAAGACCTTGTTGCCTTATCTTCCAATTCCTCATGTTAGAGACATGCTGATTCCTCCATCTGACAGGCAAAGATTGCTTGGTGCCTGGAATAGAGCTGTCCGATTTTTGAGTGGCAATGAGTCTCGCATTCGAGTTGAGAGCCAAAGAATCGCTGGGGAAGATTTTGAAGTTTGGAGGTGGATCCAAGTTGCCACGCCCAAAGCCCACAGCCCAAAATCGGGCAACAAGCGTGGAAAATACTGGCAGGGACAAGCGTTTGAAAACTTTCAATCAGCTGTAAACCCACCTGTTATTAGTCCAACGCCATGTTTGAAGATACGAAACATGTTTGACCCCGCTGTTGAAACTGAAGATGGCTGGCACGTTATGATCCAAGATGCCATTTTGGAGAAGTGCATCGAGAACGGAGCTGGCGTAGTCCATATTGCCGTTGATAAGAGTTCTGTCGAGGGATGTGTTTATGTCAAATGTGATACTCATCACTCTGCGGGGTTGGCCTTTCGAAGTCTTCATGGCTGTTGGTTTGATGGTCGACTTGTTGCGGTGAAATACCTTACCCTTAAGAGATATCATCAGCGGTTTCCCGTTGCCATGGAAGCCACCGAACGGATCAATCCATCTGGGACCTCCCCGTCGTCGCTTGTTGTATTTGATCCCGCTACTGGAGATGAGGATGTGAATGATTCTGATATTGAGCTTTAGATTTGTATTGTCTGTTGCTGATTGGATGGCCAGTGTACATCCGCGATTTGAAAATTAAAGGGGTTGGAATTCTCGGGTTGAAGGTAATCAAGCGAGAAAAATACCACGCTGGTATGTTCCAGTTGTAGCTCGCTTGATTGGCTGAACAAAGTGCAAGTGATCGAAGAAACAAATCAGAGGAAAGAGAAAGCTTGGAATGTGTCGATCAAGATGTTTCATTTGAATGATCACATTATTAAAGACTCAGTATTACAAAATGATTTTTAAAACTAAAAAAGAACACCTTTAGTGCAGTGAAAATTGTGAACGACAGTTCATAGACGCGAAAATAACGAACCACCTAAATCTGTCACAAAACTGCGCAACAAGAAATTACAACACGTTAGCATGGAATTTCCCGTTTAAGTTTTGATAGGCTAGAAAACTCTTGCAGTACCAAAGACGCTCAACTTTACTGTTACAAATAACTGCCGCCTCAGCTACCATGTCTAGTCCAATCTGTAACTTCACTCATATTCGAATATTTGACGATTTATCTGTCAAACGTGATTTTGCAATCTTTCTTCGACTCACTCAACAAAAGTCATGCCCGCGAGCGTTTTCCCACACTAAAAGGGACCGGTCACT

Protein

Uniprot

Uniprot term	Description
Q9Y2U8	Inner nuclear membrane protein Man1 OS=Homo sapiens OX=9606 GN=LEMD3 PE=1 SV=2
Q9WU40	Inner nuclear membrane protein Man1 OS=Mus musculus OX=10090 GN=Lemd3 PE=1 SV=2
Q7JRE4	Inner nuclear membrane protein Man1 OS=Drosophila melanogaster OX=7227 GN=MAN1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15519	RBM39linker	linker between RRM2 and RRM3 domains in RBM39 protein	Domain	Interproscan
PF09402	MSC	Man1-Src1p-C-terminal domain	Domain	Interproscan
PF03020	LEM	LEM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052277	Family	Inner Nuclear Membrane ESCRT-Associated Protein	Interproscan
IPR011015	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR003887	Domain	LEM domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR041885	Homologous_superfamily	MAN1, winged-helix domain	Interproscan
IPR029123	Domain	Splicing factor RBM39, linker	Interproscan
IPR018996	Domain	Man1/Src1-like, C-terminal	Interproscan
IPR034394	Domain	MAN1, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13428	INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006998	Biological Process	nuclear envelope organization	Interproscan
GO:0030514	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19410	LEMD3; inner nuclear membrane protein Man1	-	Cytoskeleton proteins	ko04812	deepkoala