Gene detail

Detailed information of anas_s0114.g36.t1 in Acropora nasuta

Genomic Location: sc0000114_pilon:312566...324990
NR annotation: XP_029193703.2, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like isoform X3 [Acropora millepora]
Species abbreviation ANASU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

anas_s0114.g36.t1

ATGGAGGAGACAGTGAATTCTGTTTGCGTTAGTTTGTCACCGGCAAAATCGGGCAACTGTGGCAACAGGAAAAAGAGGAAAAGGCATTCTTTTATCGAGGCCGATGATAGCAAAGATGACAGAGGAATCAATAATGCCCTTAAAAAATTTCGCGATGTTTCAAATGAAGAGAGTTTTGTCAAAGCGAAAGGTTGTAACAGTGAAAGAAGTCCAAACAAAGGAGTTACCATTGACACTGTTAAGACATCTGCAGCTGATAAGAGTAAAGAAAGTGGACCAGACGTTATTTCTCTGTCATCTGATTCATCCAatgatgaagatgttggtgatgatgTTCAGAGCGAAAAACAAGGAGTGCAAATAAACCAAGAGGGAGAAGAGGTGGAGATAGTTGGAGAAAGCACAACAGAGATAACAATTGCAGATTGTACCAACCTCATTCCTCTTGATAGTGATGAAGAAACATACAGCGATGAAGAAATGGTTACAATCCTCTCGTTCCTCAATGAATGCACATCACAAGAACTGGGTGCTGTTCCTGGGCTATCAGCCAAAAAGGCTGAGAAAATTATGAACTTGAGACCCTTTGATTCTTGGGACAACCTTGTCAACAAGCTAGATTCTACACCACAGATGTCATCTCAGGTGATTGATAACTGTCATAGCCTTTTGGAAGAGCGTAAAGCTGTTGACAAACTCATGAAAAAATGTGAAAAGATCTCAAGCAAAATTCAAGATATTCTCAGTACAAGATTAACTGCCATTAATAATAGTCACAACCTCAATGGAAAGAAGGACGCACCTATCATAACACAACCCAAGACTTTAAATAGCAGCCTCAAACTCAAGCCATACCAAATGACAAGCCTGAATTGGCTCACACTTATGCACGAACAAAATGTCAACGGGATATTGGCAGACGAAATGGGTCTTGGAAAAACAGTACAAGCCATCTCGTTCCTGGCGCATTTGAGTGAAAGAGGAGAAGACGGTCCGCATCTAATTATTGTGCCAGCTTCAACACTAGATAACTGGTGCAGGGAGATTAAAAGATGGTGTCCATCAATGGATTTCATTATGTATTATGGGAATCAAGACGAAAGACTTTTTATACGCGATGAGGTAGAGAGCATGGAAGATAATCCAGATATCGTTATTACTACCTATTCAATAGCGACAGGAAATGCAGAGGATCGCAAATTCCTCAGGAGACTGAAATGCAATTACATGATATTGGATGAAGGACACATGTTGAAGAACATGCAGTCACAAAGATACCAAGGACTTATGAAACTGACGTCCCAACGGCGCCTTCTCCTCACAGGGACACCATTGCAGAACAACTTGCTGGAACTCATGTCTCTTCTCAGCTTTGTGATGCCTTCGATGTTTGGCGAACGTGTTCAGGGAATCAAGATGCTCTTCTCTTACAGCCGAATGAAAGACGACCCTGGCAGTAACTACGAAAGAACAACAGTGGAACAAGCCAAGCGAATTATGAAACCGTTTGTTCTTAGGAGGTTGAAAAAAGATGTCCTTCAGCAGCTTCCCGCCAAGCATGATCACGTGATCAAATGTGAGCTGACTGATGCCCAGCGGCAGTTTTACAATGACAACTTTTTGAAATGTTCCAAACAATTCAAGCAATCAAATTCTGCTTCACAATATAGCAATATTGTTATGATGCTCCGCAAAGCCGCCAACCATCCTTTGCTATTGCGCAATCTCTATCAGGACAGAGCATTGCTGGAGATGGCTAAAAAGTATTGCAAGGACCTTTCACATCGCGACTCGGAGCCTGATCTGGTGTTTGAGGACATGACGGTGATGTCAGATTTTGAGCTTCATTGTTTGTGTCGCGAGGAAAAGAATCTGGCCAGTCACTGTCTGGATAAAGAACAAATGTTAAATTCAGGGAAATTCGTCTACTTGGACTCACTGCTTCCTGAATTAAAGGAAAAGAACTGCCGAGTCCTGCTTTTTAGCCAGTTCACCATGGTGATGGACATCATTGAGGTTTATCTGTCTGACAGACGTCACCGCTACCTGAGATTGGACGGACAGACGTCTGTAGTGGAAAGACAAAACCTTATCGATCAGTTTAACGCTGAAGCTGATATCTTTGTATTTCTTCTCTCTACGAAAGCAGGAGGCCTAGGGATTAACTTAACAGAGGTAACAGTGTATAGATTGATCGCCAGTAATACGATAGAAGAGGCCATGCTTCAGTGCGCACAGAACAAGCTTAGATTAGAGCGAGACATGGCAGCGATGGATAATGGGGACGAAACAACTCCGAAAGCCCTTTCTAAAGTGCTTCATGAAATTTTCAGTAATTGCAGCTCTGGCTCGTCTTAA

Transcript

anas_s0114.g36.t1

CTTACTGACGCCTTGGGGGAATTTGCCGCCAATTTTTCATCGCGGTATTTACAAGAAACATTATATAGGACTTTTTCCTTAAAATATTTGGAAGCAAAGGCATAGCAAGCAAATTTAGACACGTTGGCACGTTGAAACAATGTCTCAGTTAAATCTGGGCAAATTTTGTTACCAGCGAAAACATTTGGTTCCTAAAATTAACTTGTGTGATTTGATGCCGGCTCGTGGACATGCAACAACCTCGGAATTGAATAATAATCGGTATGAGCACTATTTAGACACTGAGAATAGCGGAGATACCAAGACGATGTCAGGAGAAGTAGGTGAGTCTTAAAGTAATGAATATTTAGCTGAATATGTAAGACAATTGCGAGCGATAAACAGACCGCAAACCGTGGAGGCGATAACTTCGTCTGATGAAACTTGGTAAATGGAGGAGACAGTGAATTCTGTTTGCGTTAGTTTGTCACCGGCAAAATCGGGCAACTGTGGCAACAGGAAAAAGAGGAAAAGGCATTCTTTTATCGAGGCCGATGATAGCAAAGATGACAGAGGAATCAATAATGCCCTTAAAAAATTTCGCGATGTTTCAAATGAAGAGAGTTTTGTCAAAGCGAAAGGTTGTAACAGTGAAAGAAGTCCAAACAAAGGAGTTACCATTGACACTGTTAAGACATCTGCAGCTGATAAGAGTAAAGAAAGTGGACCAGACGTTATTTCTCTGTCATCTGATTCATCCAatgatgaagatgttggtgatgatgTTCAGAGCGAAAAACAAGGAGTGCAAATAAACCAAGAGGGAGAAGAGGTGGAGATAGTTGGAGAAAGCACAACAGAGATAACAATTGCAGATTGTACCAACCTCATTCCTCTTGATAGTGATGAAGAAACATACAGCGATGAAGAAATGGTTACAATCCTCTCGTTCCTCAATGAATGCACATCACAAGAACTGGGTGCTGTTCCTGGGCTATCAGCCAAAAAGGCTGAGAAAATTATGAACTTGAGACCCTTTGATTCTTGGGACAACCTTGTCAACAAGCTAGATTCTACACCACAGATGTCATCTCAGGTGATTGATAACTGTCATAGCCTTTTGGAAGAGCGTAAAGCTGTTGACAAACTCATGAAAAAATGTGAAAAGATCTCAAGCAAAATTCAAGATATTCTCAGTACAAGATTAACTGCCATTAATAATAGTCACAACCTCAATGGAAAGAAGGACGCACCTATCATAACACAACCCAAGACTTTAAATAGCAGCCTCAAACTCAAGCCATACCAAATGACAAGCCTGAATTGGCTCACACTTATGCACGAACAAAATGTCAACGGGATATTGGCAGACGAAATGGGTCTTGGAAAAACAGTACAAGCCATCTCGTTCCTGGCGCATTTGAGTGAAAGAGGAGAAGACGGTCCGCATCTAATTATTGTGCCAGCTTCAACACTAGATAACTGGTGCAGGGAGATTAAAAGATGGTGTCCATCAATGGATTTCATTATGTATTATGGGAATCAAGACGAAAGACTTTTTATACGCGATGAGGTAGAGAGCATGGAAGATAATCCAGATATCGTTATTACTACCTATTCAATAGCGACAGGAAATGCAGAGGATCGCAAATTCCTCAGGAGACTGAAATGCAATTACATGATATTGGATGAAGGACACATGTTGAAGAACATGCAGTCACAAAGATACCAAGGACTTATGAAACTGACGTCCCAACGGCGCCTTCTCCTCACAGGGACACCATTGCAGAACAACTTGCTGGAACTCATGTCTCTTCTCAGCTTTGTGATGCCTTCGATGTTTGGCGAACGTGTTCAGGGAATCAAGATGCTCTTCTCTTACAGCCGAATGAAAGACGACCCTGGCAGTAACTACGAAAGAACAACAGTGGAACAAGCCAAGCGAATTATGAAACCGTTTGTTCTTAGGAGGTTGAAAAAAGATGTCCTTCAGCAGCTTCCCGCCAAGCATGATCACGTGATCAAATGTGAGCTGACTGATGCCCAGCGGCAGTTTTACAATGACAACTTTTTGAAATGTTCCAAACAATTCAAGCAATCAAATTCTGCTTCACAATATAGCAATATTGTTATGATGCTCCGCAAAGCCGCCAACCATCCTTTGCTATTGCGCAATCTCTATCAGGACAGAGCATTGCTGGAGATGGCTAAAAAGTATTGCAAGGACCTTTCACATCGCGACTCGGAGCCTGATCTGGTGTTTGAGGACATGACGGTGATGTCAGATTTTGAGCTTCATTGTTTGTGTCGCGAGGAAAAGAATCTGGCCAGTCACTGTCTGGATAAAGAACAAATGTTAAATTCAGGGAAATTCGTCTACTTGGACTCACTGCTTCCTGAATTAAAGGAAAAGAACTGCCGAGTCCTGCTTTTTAGCCAGTTCACCATGGTGATGGACATCATTGAGGTTTATCTGTCTGACAGACGTCACCGCTACCTGAGATTGGACGGACAGACGTCTGTAGTGGAAAGACAAAACCTTATCGATCAGTTTAACGCTGAAGCTGATATCTTTGTATTTCTTCTCTCTACGAAAGCAGGAGGCCTAGGGATTAACTTAACAGAGGTAACAGTGTATAGATTGATCGCCAGTAATACGATAGAAGAGGCCATGCTTCAGTGCGCACAGAACAAGCTTAGATTAGAGCGAGACATGGCAGCGATGGATAATGGGGACGAAACAACTCCGAAAGCCCTTTCTAAAGTGCTTCATGAAATTTTCAGTAATTGCAGCTCTGGCTCGTCTTAAAAAGAATCAATGGAGTCTTCTCTATAAGAAGCGTTATATTTAGGGTACTTGGCATTTACCAGAACTGGTCTGTTAGATCGTCTAGTTCTCAAATGGAAGATCTCGTTTCATGGATGGAGGGTTACTTGTTAGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5FWR0	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Xenopus tropicalis OX=8364 GN=smarcad1 PE=2 SV=1
Q9H4L7	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens OX=9606 GN=SMARCAD1 PE=1 SV=2
E1B7X9	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Bos taurus OX=9913 GN=SMARCAD1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005799 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799 all species →	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14439	SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.