Gene detail

Detailed information of anas_s0159.g37.t1 in Acropora nasuta

Genomic Location: sc0000159_pilon:575601...596156
NR annotation: XP_044179114.1, semaphorin-5A-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

anas_s0159.g37.t1

CTGCTGGAACAAGTTGGGCAAGATGTCAGTTGCAACTGGAATAGTGGATACTTGCTATCCACCCTTTGAACAAGAACGGCCAGATCGATAGTGAAATAAATGGTAAATTTCCCATCTTTAGACCCAAATGCATCTGTCTGTTGATTGGAGCTGCAATTGCATGATTCAGTTTTTTAATCTCTTTTAGTATTGGAATGTGCCACAACAGCCTGGCGATAACGCTTTTGTCAAGATGATGTTACCTTTTGGCGACAAAATTTTACTCTGTTGGGTTGAAAAGCCATCCACTGGAAGCTGCACTTGGAGAAGTAGGACAACTTTAGAAGAAGCTCCAGAAAGCAATCAAGGATACGTGATCAAGTCTAACGAAAAATATGATGCACCAAGTTCATCACCAGATCAGAATGATACAGCCATCATCACAGAGGACGGGACTCTCTTTGTTGGAACATTTTCGGCCCTTGGAGGCTATTCATTCATTTACAGCAAGAGGTTCAGACATCCCCAACTGAAGGAGGGCGATCGTGGTGGCCGCTATCGGCTGTTAAATACCTTTGTAACCTTACAAAAGGCCAAGTTAATGTGCAGTGATGAGAGGAATTACGCGCTGAATTTTAATGAAATTCAGGATGTTTGGTGGGACAATCGCACAGGCCAATTTTATGCAGCTTTCAGCTCACAGCCGAATGGTCCTGCGATATCCGCTATTTGCATTTACAGCTTGTCATCAATCAATCGGATTTTCATCAAAAGTGATTTCAAATCTTTCACAAGTGAAACTAAGGGTTGGACCATAAAGAGGAATAAGATTGGAGAATACTTTCCAGGCTGCAAAGTGAATCCGAAATACCTCAAAAGCTCTTCTTCCGTTGCTGATGGCGTGATGGCTACAAAAGATATGCTGACATTAGCTTACGTAGACCTAATGCATAACACAATGCTGTCTGATGGAGTGAGGCCTGTTGGATCGAAAGCTTGGTTTATTAGAAACGGGATCAGAATGACTGCCATTTCCCTGGATGTCGTTGGGCAGAATATCGTGGTGTACGCTGCAACAGATCGAGGGTCTGTTGTTAAAGTTGCACAACCGCAAGGGCTTTCTCAGCCATGTCTTTATTCTGAAATGGAAGTTTATCCTCATGTTTTGTACCTGGGAACACGTTATTCGCTTACACAGCTAACTTTGGATCAGTGTGAACGATATCAATACGACAAGAGGGAGACTCAACAAAATTTGACAATCTGCCCAAAAGTCCGCAAAGGTGTCATTGATTGCGACTGGAAAGTGTGGTCTTCCTGTTTTTGTGATCACGGGTTAAACTTGGCTAAAAAAGGTTCTGGTGTAATGTACAGGGTTCGCAAGTGCTGCAGGACGTGGCCAAACGAAGCTTCTTGTGCCAATGGCGCTGAGTTCAAGATGTGTTTCTGTAAAAGACCGACAATTTGGATTTCACAATCTGAAATGGGTCCGTTTTGTGCGCAACCAAATCGCTCATCTTACGCAGGAAGTGACTTAGTTGGTGGTTCTgaagacgacagtgtcatggcggataagagagcaaagaagggagctaggaattgttgtgctgccggtggtcccaataacgttaattgctccaacaaaaccggaacgcctggaattgccatgccttattttcctaaggaggagagtttgcggcagaaatggacgcgatttgtccggataaataggagagatttcgtgccgaagaagtcgtcttgcctgtgttcggctcactttgacgattgttgtttCGAACGCAATCCGTTGTCTTTAATGGATGCAACTGGAGAGGCTATTGAGTTAAAAACACGTCTGATAAAAGGTTCAGTACCAACAAGGACTGATGTTGTGCCCTATACGTCTCCTTTGACTGACCGAAAGCGGCGAAGAGAGCCAGAGAAAGAGATGGAGGCTGAGTTGTTTGCTGTTGAGATGGAAGAGGAAATGGAAGAGGAGATGGATGAGGAGGTCAAGGAGGATGTAGAAGATGAATTGGAGGATGCTAATTGCGGCCCACATGAAGATAGTGCACCATCAACAGATGATTACTCTTCACAAACTGAAGAAGAGTGTGATGGTATTGATTCCAGCAACACAATGAGGTAAATTTGTTTGCTGTGCAGTACAGGGAAAAAGTATATATGTACATGTAGGCCAAAACCAAATCAAATGGAAGTGTGTTC

Protein

Uniprot

Gene family

Uniprot term	Description
Q9W686	Semaphorin-3ab OS=Danio rerio OX=7955 GN=sema3ab PE=2 SV=1
Q9W7J1	Semaphorin-3aa OS=Danio rerio OX=7955 GN=sema3aa PE=2 SV=1
O08665	Semaphorin-3A OS=Mus musculus OX=10090 GN=Sema3a PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	THAP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05485	THAP	THAP domain	Domain	Interproscan
PF01403	Sema	Sema domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001627	Domain	Sema domain	Interproscan
IPR006612	Domain	THAP-type zinc finger	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06521	SEMA4, CD100; semaphorin 4	-	CD molecules	ko04090	deepkoala