Gene detail

Detailed information of anas_s0188.g33.t1 in Acropora nasuta

Genomic Location: sc0000188_pilon:599084...608209
NR annotation: XP_044163993.1, transcription activator BRG1-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

anas_s0188.g33.t1

ATGGCATCGATGGCAGGTTTTCAGTACACTCCAGAAAACATGCAACGCCTAGAAAAGGCTTTGCACACGATGCAGGAAAGAGGCATGGAATCTGACCCTCGATATGCGCAGCTGTTGTCGTTAATGAGAGCCAAACCTCCAAATCTTGATATGTTAGATGTTGGCCATGGCTCTCTGCCACCTGGTCCCTCAATGTCTTCAATGGGTATTGGAAGCATGCCTGGTGCCACAATGGGAGACATGCAATCGAGGAGTTCCCCCGCTCCAAATATTATGTCACCATCGGCACAGAAGGCACACGCTTTCTCTTCACCACAGCTTCTTCAGTTGCGAGCACAGATCATGGCCTACAAACTGTTGGCACGTAATCAACCTCTTCCAGAACACATTCGCAGTGCTATCCAAGGCAAGGCCTCCATAGGGAAACCCTTGTTGAGTGGTAGTGGTCCTGCACAGACGAGTCAAATGTCATCAATGAGTCAAAATCAAGCAGTGAACCAAGTGACTCCTCAAGGTCAGGCAGCTATGGGTGCTGGAAGTGGAGTAGCATCTGCAACTGGTCCTGTTCCAAATCAAACTGCTTATAATGTCCCTGGAATGACATCTGCTCAGCAACTCCAGAGCAAACAGACAGCTGGGTCTACACAGTCATCAAACACAGCCTCTTGGGCGGCAGCTAAAGGTGCTGCTGCCAGTGCAATTGCTGCGGCCACAcagcagcataagctgaaggaacagcagcgtcaggcattggcacagcagcagcagcagcaacaacagcaacagcaacaacaacagcagcagcgcaAGGCTTCATCACAGGGTTCATCAACACAAGGAGGGATTCAGATGCCAAGTAAACCCAGACTGGCACCTGTAGCCAAACCTGTTGGACTAGATCCTGTTACTATTCTGAAAGAGAGAGAAAACAGAATCCAGGCACGTATTGTGCAGCGTATAAAGGAGCTGGAGGGATTGCCAGGGAGTATTCCAGATGACTTGAGAATGAAAGCTATGATTGAATTGAGAGCTCTTAGGCTTCTCAACTTCCAGAAACAGTTAAGAGCCGAAGTGGTTGCATGCACAAGAAGAGATACCACTTTAGAAACTGCTCTGAACTCCAAAGCTTATAAACGGAGCAAGAAACAGTCTCTTAGGGAGGCAAGGATCACTGAAAAGCTTGAGAAGCAACAGAAGATGGAACAAGAGCGAAAACGTCGCCAGAAACACCAGGAGTACTTGAACACCATACTGCAACATGCACGCGACTTCCGTGAATACCATCGAGGAATCCAGTCCAAGTTGGTGAAACTCAACAGAGCTGTCATGAGCTACCACTCTATTACGGACAGagagaaaaagaaagaagaagaaagaattgagaaagaaagaatgaGGAGACTTATGGCTGAAGATGAAGAAGGCTACAGAAAACTTATCGATCAGAAGAAGGACAAACGTCTGGCGTACCTTTTGGCACAGACAGATGAGTATGTTGCCAGCCTTACAAAAATGGTCCAACaacacaagagagaacaacggaagaaacacaaaaaagaaaacaggaaacGACGCAAGTCGGACTTTGATGATGACGAGACACCAGATGCTGACAGGCATGTGCCTGTGGTGGACACTGAAACTGGAGTGGTCCTTAAGGGAGAGGATGCCCCTGTCGCGCATGATTTAGATCTGTGGCTGGAGACTCATCCAGGCTATCAAGTGGCTCCACGTCAGGAACAGGAGTCAgatgaggaggaagatgatgaagatgaagacggtgatgctagtgatgTGGGAAAGGATGCTGCTCaaaagaagagtgaaaaggaaaagaaaagagaagaatatggaaagGACGAGGAGGATATACAGGAAGAAGAAGTTGATGATCCAGCAGCCATGGAAAGTAGGCAGTACTACAATATTGCTCACAGTTTCCAGGAAGACATCACTGAACAGCCATCCATTCTTGTTGGTGGCCATCTCAAGGAATATCAGTTGCGAGGACTTGAGTGGTTGGTTTCTTTGCACAACAATGCTTTGAACGGCATCCTTGCTGATGAGATGGGTCTTGGAAAAACCATTCAAACAATTGCTCTTTTTGCTTATCTGATTGAGATTAAGAAACTCAATGGCCCCTTTTTGGTTATTGTTCCCCTATCGTAA

Transcript

anas_s0188.g33.t1

GATGGTTCACTCGCGCTTCTACCGCAGGGCTCGGTGAAGGGTAGTAGCCAACTTTTTGCCCATTTATCTCAAGGAAGAATTGTAGCGTGACAACATTGTTCGGCAGCATGGCATCGATGGCAGGTTTTCAGTACACTCCAGAAAACATGCAACGCCTAGAAAAGGCTTTGCACACGATGCAGGAAAGAGGCATGGAATCTGACCCTCGATATGCGCAGCTGTTGTCGTTAATGAGAGCCAAACCTCCAAATCTTGATATGTTAGATGTTGGCCATGGCTCTCTGCCACCTGGTCCCTCAATGTCTTCAATGGGTATTGGAAGCATGCCTGGTGCCACAATGGGAGACATGCAATCGAGGAGTTCCCCCGCTCCAAATATTATGTCACCATCGGCACAGAAGGCACACGCTTTCTCTTCACCACAGCTTCTTCAGTTGCGAGCACAGATCATGGCCTACAAACTGTTGGCACGTAATCAACCTCTTCCAGAACACATTCGCAGTGCTATCCAAGGCAAGGCCTCCATAGGGAAACCCTTGTTGAGTGGTAGTGGTCCTGCACAGACGAGTCAAATGTCATCAATGAGTCAAAATCAAGCAGTGAACCAAGTGACTCCTCAAGGTCAGGCAGCTATGGGTGCTGGAAGTGGAGTAGCATCTGCAACTGGTCCTGTTCCAAATCAAACTGCTTATAATGTCCCTGGAATGACATCTGCTCAGCAACTCCAGAGCAAACAGACAGCTGGGTCTACACAGTCATCAAACACAGCCTCTTGGGCGGCAGCTAAAGGTGCTGCTGCCAGTGCAATTGCTGCGGCCACAcagcagcataagctgaaggaacagcagcgtcaggcattggcacagcagcagcagcagcaacaacagcaacagcaacaacaacagcagcagcgcaAGGCTTCATCACAGGGTTCATCAACACAAGGAGGGATTCAGATGCCAAGTAAACCCAGACTGGCACCTGTAGCCAAACCTGTTGGACTAGATCCTGTTACTATTCTGAAAGAGAGAGAAAACAGAATCCAGGCACGTATTGTGCAGCGTATAAAGGAGCTGGAGGGATTGCCAGGGAGTATTCCAGATGACTTGAGAATGAAAGCTATGATTGAATTGAGAGCTCTTAGGCTTCTCAACTTCCAGAAACAGTTAAGAGCCGAAGTGGTTGCATGCACAAGAAGAGATACCACTTTAGAAACTGCTCTGAACTCCAAAGCTTATAAACGGAGCAAGAAACAGTCTCTTAGGGAGGCAAGGATCACTGAAAAGCTTGAGAAGCAACAGAAGATGGAACAAGAGCGAAAACGTCGCCAGAAACACCAGGAGTACTTGAACACCATACTGCAACATGCACGCGACTTCCGTGAATACCATCGAGGAATCCAGTCCAAGTTGGTGAAACTCAACAGAGCTGTCATGAGCTACCACTCTATTACGGACAGagagaaaaagaaagaagaagaaagaattgagaaagaaagaatgaGGAGACTTATGGCTGAAGATGAAGAAGGCTACAGAAAACTTATCGATCAGAAGAAGGACAAACGTCTGGCGTACCTTTTGGCACAGACAGATGAGTATGTTGCCAGCCTTACAAAAATGGTCCAACaacacaagagagaacaacggaagaaacacaaaaaagaaaacaggaaacGACGCAAGTCGGACTTTGATGATGACGAGACACCAGATGCTGACAGGCATGTGCCTGTGGTGGACACTGAAACTGGAGTGGTCCTTAAGGGAGAGGATGCCCCTGTCGCGCATGATTTAGATCTGTGGCTGGAGACTCATCCAGGCTATCAAGTGGCTCCACGTCAGGAACAGGAGTCAgatgaggaggaagatgatgaagatgaagacggtgatgctagtgatgTGGGAAAGGATGCTGCTCaaaagaagagtgaaaaggaaaagaaaagagaagaatatggaaagGACGAGGAGGATATACAGGAAGAAGAAGTTGATGATCCAGCAGCCATGGAAAGTAGGCAGTACTACAATATTGCTCACAGTTTCCAGGAAGACATCACTGAACAGCCATCCATTCTTGTTGGTGGCCATCTCAAGGAATATCAGTTGCGAGGACTTGAGTGGTTGGTTTCTTTGCACAACAATGCTTTGAACGGCATCCTTGCTGATGAGATGGGTCTTGGAAAAACCATTCAAACAATTGCTCTTTTTGCTTATCTGATTGAGATTAAGAAACTCAATGGCCCCTTTTTGGTTATTGTTCCCCTATCGTAAGTAGTACAATTTGCTATATTATAATACAGTGGAACTTTAATT

Protein

Uniprot

Uniprot term	Description
Q6DIC0	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 OS=Mus musculus OX=10090 GN=Smarca2 PE=1 SV=1
A7Z019	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 OS=Bos taurus OX=9913 GN=SMARCA4 PE=2 SV=1
P51531	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 OS=Homo sapiens OX=9606 GN=SMARCA2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07529	HSA	HSA domain	Family	Interproscan
PF08880	QLQ	QLQ	Domain	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF07533	BRK	BRK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014012	Domain	Helicase/SANT-associated domain	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR037259	Homologous_superfamily	BRK domain superfamily	Interproscan
IPR014978	Domain	Glutamine-Leucine-Glutamine, QLQ	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR006576	Domain	BRK domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan