Gene detail

Detailed information of anas_s0221.g28.t2 in Acropora nasuta

Genomic Location: sc0000221_pilon:329706...339409
NR annotation: XP_015771868.1, PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like isoform X3 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

anas_s0221.g28.t2

GGTTTCAGTTTTGAAGAGAGTGTGACTCTGCTATGGCTGTCGCGTTATCGGTGGCTTGTTGTTGTTAGCAATGTTTTTAAGCTAAGAATTCAGCCTTGGAACGTTTCAAGGACTCTGCGTTATGGCGACGAACAAATTGGTCAACGGGCTTCCGAGTCAATCAGTTGAAGCAAAGAAGCGAATGACTAAAGAGGACGATGAGGGAAAACTCTTCGTGGGCGGACTAAGCTATGAGACCACAAAAGAAACTTTGACCGATTATTTTAAGAGTTTCGGGGAAGTCATCGGCGTTGAGATTAAAATGGATGCTTTGACGGGCCGTTCAAGGGGCTTCGCGTTTGTGCAGTTTAGAGATCCGAAACACGCGAATGCGGTCTTGAACCACAACAAACAGCATTTGATAGATGGCAAGGCTGTTGATCCTAAACCAGCTGCACCCATTAACAAACCACCTCATTTGAGGGTGAAAAAAATATTTGTGGGAGGTCTCAAGCCAGATACTACATCAGACCATCAAATAAGGGAATATTTTAAACAATATGCACCAGTGAAAGACATAGAATACGTTACAGAACACTTATCAAAAAAGAAAAGAGGGTTCTGTTTTGTTTCCTTTGATTCTGAGGACACTGTAGACAAGATTTGTGAGTTACAATTCCATGAGATTGATGGAAATAAAGTTGAAGTTAAACGAGCGCTTCCTAAGGAAGTACAGCAGCAGCAAGCAGCATTACGGGCTGCTGTGGCTGGAAGGGGAATGATACCAGCCATTGCAGCCACAGCTTTTGGAGTTGTTCCTGGAAGAGGAAGAGCTACGACCGGTTTGGGCAGAGGAGCTGGTGGTATTAATCTAGCAGCCTACAACCCAACATATGCTGCAGCACTTTATGGAGCGGCATTTGGAACATCTGGCTCTTACGATCCAACCCTGTATGCCGCCGCTTCTTACCCTGGCCTTCCGGCCGCCTTTCCAGCCTACTCTCCTGGAAGCGCATTtgctacagctgctgccgctgcttctgcAGAATACCCAAGAGGGGCGTATGCATTACCATACAGTCCTGGTAGAGAACCGAGTATTCATCTCCCAGGTATGCAAGGATCACAGAATAAGGAAATATGTTGACTGAGGATTGAATGATGCAGTACTACTCTCTGTTTCATATTATTGACTAATTGGTGAATTAGTATCAAAAGCATTTTCAATCAGAGATTTTAGAGAAGGAATCTTGTATGTATGAACACATGTTTTATTTCACTATTTTTAAGGAACATTTTTTCTGATGTTGCCATTTCATGAAGAAGTTTATTTAGTGAGATGTTAGAATTGAATTTATCTAATTGAACAACAGATAGTCATTCCCCTGTTGTCTCTTTCAATTCTACACAATCATACACAATTTGTATTTATACAAGAGGAAGAGATGATATTATATTTTTGGAGAATTGTAGTTTTTTGGGATTCCTACTTTGGATTGGAGTTTTTGGGATTTCTTTAGTAAGACAATGAATCAGAGAAAAAGAAGAATGCTTTTTCACTTATCTGAAGTTATTAGCATGTATTTATTGTTGTAACAACAGATTTTGAAAAATATGACAGGTCTCCAATCCTTTTATTCCCAAAGAATTACAGAAGTGTACCATTTGCATGGAAAAACAGCTTTAGAAGCTGCACGAATTCACGAGCAGTTGACTCAAGAATTCATTTTATTTTATTTAGAAAGTGAGCGGAACATGTTGAGCCAATATTTATTGTACTATGTGTCCAGAGCAGTTACTTGTTGTATAAATTAATGTTCAAGTAGATGATAATATGCATGTTTACCATTGGTTCGTGCATGGGACCTGTTAAGTTATATCTTTGTCTTTGGTGTATTTAGGTAGCAAGTAATTGGTTGAATACAGTGCTCCCACTAAGGGTTTGAAACATAATACATTGTGTACTAAGTACTTTTTCATAGAAGCATTCACAAAACACTTTCAGCATATGGTGTAGATAGAGCTAATTTGACTGCGGGTTTTAGTTTCACTTACATGAAGGTTGCATGAAATTCTGAAGGTACTGTGACTACTACTATTTTAAGAGCTAATTCTGTCATGTTAAAAAAAACTGTTATCACAAGTCTCACAGTCATAAAAACCTTAATGTTTAGCAAACCTTTGACAATGACACAAAGCACTCATCTGTGTACTCAAATGAAGTATTAATGCAAAA

Protein

Uniprot

Uniprot term	Description
Q99020	Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus OX=10090 GN=Hnrnpab PE=1 SV=1
Q99729	Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens OX=9606 GN=HNRNPAB PE=1 SV=2
Q7ZX83	Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis OX=8355 GN=hnrnpdl-a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan