Gene detail

Detailed information of anas_s0256.g30.t1 in Acropora nasuta

Genomic Location: sc0000256_pilon:404935...416505
NR annotation: XP_044173812.1, leucine-rich repeat and WD repeat-containing protein 1-like [Acropora millepora]
Species abbreviation ANASU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

anas_s0256.g30.t1

CTACACACACGTGCATTGAAAGTGTTTACGTGAAGTTTACGAGACGGATGTGAGTTTTAGTTGGAAAGAAGGCCGCTTCTTTCTCGTTATTTGCTGGATTCAGGACCTTACAGCATGTCCACCAGTCAAACACTTACGGTCGAGGAAATAAAGAAGCGAGCTGGTTGCGAGGACTTAACTCAAATACGGCATCTAAATTTGTCGGATCTTGGATTGACATCCGTAGTGACTGACACCTTGCAATGCTTGCCAAATCTCGAAGAACTTGATCTTTCCAAGAACAAGCTAACAGCGATAAAACTTGATAGTGTCATGCCACAAGTGAAAACCCTCAGCCTTTCCAGCAACCAGTTATGCAGTGTGGATGGATTAATCGCATTTCCCAGCCTTGAAAGCGTGGATGTCACAAATAATCCTACTCTTGAGGTTTCAGATAAATACAAACTGGTGTCTCTCTGTCCTATGTTAAAAACAATGGATGGAAAGGACATTGGCCTCATGCGAGATGCTGTCAATCGACTTAATTCTACGTTGTCACAAAAGGCATCTGATACGTGGAAAATTCATTTTAGCAAAAAGTATACGGTAAATCAACTAGAAGGTGGAAAAGGGGCAGAAATTGAAAGTGAATTTATTGAAAAACTCAAGAGTGAGGTTACTTGTGGACCCGCCATGCTGAAAAATTATAGAGAATACCAGCTTTCAGTATTAGGGAAAGATCATCTTCAGAAACTCTTTGAAGGACGTTTGGAAGAAGAGCCGCCAAACAAGAAACAGAAGACAATCGAAGTCAATGGACAGACTGAAAATGTTGATGAAAAGGCAAAAAGTGACTCCAACAAGATGAAGAGTATAAAAACCCCAGACAGTAAATTCGGCAAAAAGAAGCAAAAAACACCAAGAAAGGAAACCAAGACACAGACTAGTAGTCCAGCATACTGTGAGTTTGCAGTATCTCATCTGCTGCAGACCCATTCTCTTAATAATGACCCATCCGACAGGAAAACGCAAGTGTGGGGCTGTGAATTTGAGCCTGACCCTGAGAGTAAAGGGTACACAACCTTTACTTGTGCCACTTGTGGGGGGGACTCAGTCTGTTTTGTGGATTGTAGCACTGGACGTGTCATGAAGAAGTACAAACAACCAGGAGAAACATTCTACTGTTTAGCATGGACTACAGTGTGTCTCGACTCAGACCCTAATAAACAGCATAAAACCAATCTCATTGCGGCTGGAGGATCGCAGTGCACCATAAAAATAATTGAACCCAATCAGCTAGTTTGTTTTGAAGAAATTGAAGGCCACAAAGGTGTCCTAGAATGTTTGGTGTTCCACCCGCATCATCCTTCGTGGCTGCTAAGCGCAGCAGATGATAACACCATCATGATTTGGGAAATTGGTTTGCCAAAAGGAGCGGAGTATCAAGGAAAATCAAAACTCCTGTTAACTTTGAAGTCTCGCTCTATCGTACGGTTATTTTCGGTCCCACCCCATGGCAAGGTGGTCGTTGGGGGCTGTGACGATGGTTGTTACATGTGGAAACTATTTGATAACTCAACCGACCAAGGAGACAAAAAAGATAAAACAAGAACATATTATGGAAAGTTGGATTTTCCAGGCAAAAAGACAATACCTTTGGACAGTATTGCATGCCTATCAAACAACCTCATTGCGACTAAGAGAGTGGAGGAAGGCTGTATTCATATTTGGAACTCTGCGTCTGAAATGCTGGAGAATGATTTTCAAGTAGCATACAGATTGCCATGGCGGCTAACTGAAGTACCTTTTTTGAAGTTCAGCTTTGCACAAGCTTGTTCAGTATTGTTGGCTGGAGATGATACGGGATCTGTGTGGTTATATGATGCGGATCCTCAGGTTTTGGCTGGAAAGCTCAAAGACAAACAACATAAGCAAGCACAGATCCTAACGTGTCCAAACGAGACAACCAAAGTATTTAACCAAGTCAGCGCAAGCAGTAACATGGACTACATCGTGGCTGTTGCCGACACAAATGTTGTGTGCATATGGAAGCGGCTCAGAATTGAAGACGCCAGTTCGCACTCATGACACAGGTCGTGTCCGAGCGCCTAGAGATGTTGTATTTAaatagaccctttgcagctgagcggttacgtggttcgccaaactggtgagcagatggcgcactgggacgtgatgttaagcaaagaaaattcaaatttggtggctttgttaacatgtcccagtgcgtcatttgctcaccagtttggccattttgtaccacttgatcgcttagctgcaaagggcctattGCTTCTTCCGACCATGGAAAGCTGGTGAACATAAGATGCCTTCCGAAGCTTGTTGTGTTATGACTCCTGGTCACCCGATGGGGCAGGGAAAGGGGAGTGCTCTCTTTCTCCCGGCTTTAACGCTCTTGAGAACCCTTCCTGGCGGTTTCCCTTCATCCCGTTGTCTATTATAAGTAATAAAATAGCGTCAGTTTTGTTGGATCTGCTCCATCCATTCGAATAAGAGCGCGGTCTCTGTGTTTCGTTCTGCAACTAATTCGTCTTCATTTTACGCCACTCGTTCTTCTGAGAAACGGCGCTTTAAAACTTGACTGGGTGGTGTATTGCGGCTGCAGCATGAATAAAAGAGATGGGTTCGATCTTAAGCGCTTACTCTTCTTGCTATTGTGATAAAACGTTTTTGTAAATAAAGAACTTGTAGGCGCATTATATTTTCAATCGTTTCTCGACTTTACGATCGGTGCGCTCATAACTATAATCGAAGCTACGTTCAGATTTTCCCAAGTTTTTTCGATACGTCATTCGTAACCATAATATCTGAAAACTAATAAGGCGATTCTCTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0JZ65	Leucine-rich repeat and WD repeat-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=lrwd1 PE=2 SV=1
Q6GM71	Leucine-rich repeat and WD repeat-containing protein 1 OS=Xenopus laevis OX=8355 GN=lrwd1 PE=2 SV=1
B0R160	Leucine-rich repeat and WD repeat-containing protein 1 OS=Danio rerio OX=7955 GN=lrwd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005297 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR052489 all species →	Family	Leucine-rich repeat and WD repeat-containing protein 1	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24370 all species →	OPTICIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24733	LRWD1; leucine-rich repeat and WD repeat-containing protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.