Detailed information of anas_s0263.g4.t3 in Acropora nasuta

Genomic Location: sc0000263_pilon:58286...103223
NR annotation: XP_015756948.1, PREDICTED: collagen alpha-1(II) chain-like [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O93484Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN=col1a2 PE=2 SV=2
Q91717Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2a1 PE=2 SV=2
B8V7R6Collagen alpha chain (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR050938FamilyCollagen and Collagen-like Structural ProteinsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37456SI:CH211-266K2.1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19721COL5AS; collagen type V/XI/XXIV/XXVII, alpha-Glycosaminoglycan binding proteinsko00536deepkoala

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