Gene detail

Detailed information of anas_s0275.g3.t1 in Acropora nasuta

Genomic Location: sc0000275_pilon:68501...91515
NR annotation: CAH3187784.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

anas_s0275.g3.t1

ATGTCGCGGCATTCTTATTTACACCGAAGTGTTCCAAGCATTGACGTAAACCTTGGTTTACAGCTTCCAAGGATATCTCGCCTGTCCATCAACTCGCCCACCACCGCTGTAAATGTCAATCGTTTGCCTCCGTTAAGTTCTTGCCTTCAGATCAGGGCTAAATTGCAAGAAGAGGCAGAAAGAATGATCCGAGCCGAATGCGAGGCACTTAAGGCAGTTGCTGTATGGGACAATTATGGAACTTTCAGTCGAGAAGATATTTCGACAATGATAAGTGCGCATGATATTAAGAGGATTCGTGGAATGGTGAAGGAAGAGGAAAAGTGGTTTTTGGAGCTTGAAAACCTTCTTCTGGATCATAACAGTGTGGACAAAATTGAAGAGatggtcgctcTTAAGCGCTCCCTCCTGACTGGGAAAAACGCTATACCCGTCTATATAAAAGATCCACCCACAGGAACATCTCCTTCATTAAAGAAAGAATTGACTCTGGTTATTTTGAAACACGATTCAGAGGAGTCTACATTTGCAAAAGCAGTAAGGCGGCAAAAAGAAATAGTCGAGAAGTATTCTCGTCATACTTTAAAGCCTGATTTCACGGAAATGAAAGATACTTTTCAACTATTTCCAGACGAAAAATTTAAACTCCTTGGAAAGTCAATTTTAAAAAGCGCTGGGTTTTCAGATTCCGAGCTTCGAAAGCATCTGAACTTCAGCAAATCGACCATTGCAAGGGCTGACCGTAAAGTAGCAAATGCAAAATCTGTCCTTCCTGATATGTGGAAAACGGCATTTCGTATGGTGCGTTCTCGCTACCCCGGACAATCAGACAGACACCTTTTGCCAAAGGCAAAACGTGTAATGAACAAACTGGGTGCAGGGGATCTCTTGTCAAGGGAAAAATCGCAGTTTGCACATAGGCCTAGAATTGATATTGATGCAAAGATTTTGGAAACGATTGTTGAAATTTCAGCGACGAGCTCGGATTCAGGCCTTCTTACGCACGCGAAAAGACATTATGAAGTAAAATACTTGGCATCGGTCAAGGAATCGGTTGAGACAAATCAGAAACTTTCAGCAGCACGTCTACGTGAACAGTACAATTTGATTGCTAGGGAAACAGGAATGCCTACAGCAAGCATATCCACTTTGAAAAGAAGATGTTTAGCTCCCCATTCAGGCCACAAGAACAGCCAGCACTATTCTAGTGAAGCGAAAATTAAATTTGGGAAAGTACCAGATACAGGCACAAGCATTCCATCCATTAACTTACAATATTGTAGAGCATTTGTGAAGATGGAACAAAGAAAGCCATTTCGTTTTGATGAACGTTTTCCCCATCTTCGCGAGTATAGCACCATTAACAGTACAGATGCGAAGGCTCCAGTAATTCTTGGGTCCAAAAACTCCTTTGACGTAGGGCGAACATGGCTGAGCTACGTAAATGAAGATGACCGATGGAATCCATTACACGAGGAGGACGAATCTGACGTGGAAGGATGCAAAAGGGAGAGATCTGCGGATGGAAAGGTTGTGCCGCTTCAAGCTCTGCCATGTCATGACTACCACTCGGGTAGAGATGTTATTGTACCGAACACTAACCTTTTCATTGAAAAAAATTTTACTAGAGATGCTCAGAGTGGACGTGAGTCTGTGTGTTGGTCAGGTTCTAAACTTGCTGTTATCGTTTCTCCAAAATTTGAATATTCCAGTGGTGCACTCAACCATATCAACGAGCGCTATCAGCTTTGCCGGTATGGTGACAAAGAGggggaaggtcctcctctcaccatggtccacatttttgactatccagccgagttttcggacgacccagttaaacaggtcctctccggttttggtgaagttagaaatgttaaacgccagaaatttatcggtcgacctgatatcgagacaggcacacgtctggtgttaatggcctttcgtgtaataccgcctcgtctagtgagcattcatggatatttttgtcgcctttggtccaaggggcaaccgatcatttgcaacttgtgcaacgtacaaggccacaaatccaccgactgtcccaattgggacaaatgtaggcgctgtggcgtatctgggcatttcgcccggtcttgccccaatccgtggggctctgagaggtctagtaatacgggtgtggccccggtgggggagtttccgccgctttcatcggcgactcgccctcggtctgcaggacatcccccttcaacttctgcttcggcttctgctgctgttagctccgaggggtttgatagtattgtggatgatgtttgtgactcttacctggacggttgtagtgttttctccggggtctctgacgactcagacagtgatattgatttttccagcgtcgggtctgttaaaagtcctgtcaggcctgcgagcatggagacccgacgcgtcgaaaacaccccatcacatgatgcggATGAGAGTGCTATCACACCATCTACTTTGCAAGATATGATGGAAACCCCACGAGCAATGGGGGAGCTCAAACATCGGCAAAATGAAGACATGAAATCCAGTCAACCAGAGCATTTATCACCCATTGTGGGCGAAAATATGTTGCAAAAAATTTCTGAATCAACTTCCAAGTCGCCACAAGAATTAAATTCAAGGGACCAAAACCTGATGCAAAAACCACCTGAAGAGATTCCTAGTATACATACTGTAAACAGAAAAACATACCCAAAACCCGCTCAATGGATTAAGAAGTCTCCCCAAGGGGTACCCCTGAAAGACGGAAATCAAGGACAAAAACCTGCCCAATGGATTACCAGTTCGCCACCAGATATACCTCCTAGGGACCAAAACATAATGCAAAAACCTGCTGAATGGTTAACCAATTCGCCACCTGGGATTCCCAGGGTGGGTGGAAGCACAGAACCAAACCCTCCAGAACGGATCAGTGCCGATTCACCCCAAGTATTACCCTTAATGGACGTAAAAACATGGCCAAAGGCTGTAGACCCGTTGACCAGTTTGCCACAAGCAACAGCCTCAATGGACTTGGACGCTAACATGATACAGAGACCTTCCGCCGTGCGGTTTACTGATTTACCACGAGCAATGCCCACAGTGAACGGAAATACACGACAAAATCTTGGTGAGTGGATTACCGATTCCCCGCTAGGAAAACCCAGAGTGAACGAAAGTACAATGCAAACAACTCAATGGTTTACAAATTCGCGAGAAGGAATAACAGAGACTGAAAATTTGAACAAAGGTTTACCATCTCGGATGAAAGAAGAAACTGTTCCTGGAAAGGTGATGGAAAAAGCAAGGAACTATCCTCTGAAATACGAGAGCCCGGAGAAAAATACCCTGGAAAAGGAATACAAAAGAATTTTGAATAATGCTTTCACGGCAGCTAATCATGGACAGTCCGAGCCATCTCCCAATCCAACAGAACTTGCCGATATCTATCCTTCAACTTCACAGCATACTGAGGTCACCTTGTTATGA

Transcript

anas_s0275.g3.t1

AGACTGAACTTCAGTAAGCATCAGTTTTAAAAAATGTCGCGGCATTCTTATTTACACCGAAGTGTTCCAAGCATTGACGTAAACCTTGGTTTACAGCTTCCAAGGATATCTCGCCTGTCCATCAACTCGCCCACCACCGCTGTAAATGTCAATCGTTTGCCTCCGTTAAGTTCTTGCCTTCAGATCAGGGCTAAATTGCAAGAAGAGGCAGAAAGAATGATCCGAGCCGAATGCGAGGCACTTAAGGCAGTTGCTGTATGGGACAATTATGGAACTTTCAGTCGAGAAGATATTTCGACAATGATAAGTGCGCATGATATTAAGAGGATTCGTGGAATGGTGAAGGAAGAGGAAAAGTGGTTTTTGGAGCTTGAAAACCTTCTTCTGGATCATAACAGTGTGGACAAAATTGAAGAGatggtcgctcTTAAGCGCTCCCTCCTGACTGGGAAAAACGCTATACCCGTCTATATAAAAGATCCACCCACAGGAACATCTCCTTCATTAAAGAAAGAATTGACTCTGGTTATTTTGAAACACGATTCAGAGGAGTCTACATTTGCAAAAGCAGTAAGGCGGCAAAAAGAAATAGTCGAGAAGTATTCTCGTCATACTTTAAAGCCTGATTTCACGGAAATGAAAGATACTTTTCAACTATTTCCAGACGAAAAATTTAAACTCCTTGGAAAGTCAATTTTAAAAAGCGCTGGGTTTTCAGATTCCGAGCTTCGAAAGCATCTGAACTTCAGCAAATCGACCATTGCAAGGGCTGACCGTAAAGTAGCAAATGCAAAATCTGTCCTTCCTGATATGTGGAAAACGGCATTTCGTATGGTGCGTTCTCGCTACCCCGGACAATCAGACAGACACCTTTTGCCAAAGGCAAAACGTGTAATGAACAAACTGGGTGCAGGGGATCTCTTGTCAAGGGAAAAATCGCAGTTTGCACATAGGCCTAGAATTGATATTGATGCAAAGATTTTGGAAACGATTGTTGAAATTTCAGCGACGAGCTCGGATTCAGGCCTTCTTACGCACGCGAAAAGACATTATGAAGTAAAATACTTGGCATCGGTCAAGGAATCGGTTGAGACAAATCAGAAACTTTCAGCAGCACGTCTACGTGAACAGTACAATTTGATTGCTAGGGAAACAGGAATGCCTACAGCAAGCATATCCACTTTGAAAAGAAGATGTTTAGCTCCCCATTCAGGCCACAAGAACAGCCAGCACTATTCTAGTGAAGCGAAAATTAAATTTGGGAAAGTACCAGATACAGGCACAAGCATTCCATCCATTAACTTACAATATTGTAGAGCATTTGTGAAGATGGAACAAAGAAAGCCATTTCGTTTTGATGAACGTTTTCCCCATCTTCGCGAGTATAGCACCATTAACAGTACAGATGCGAAGGCTCCAGTAATTCTTGGGTCCAAAAACTCCTTTGACGTAGGGCGAACATGGCTGAGCTACGTAAATGAAGATGACCGATGGAATCCATTACACGAGGAGGACGAATCTGACGTGGAAGGATGCAAAAGGGAGAGATCTGCGGATGGAAAGGTTGTGCCGCTTCAAGCTCTGCCATGTCATGACTACCACTCGGGTAGAGATGTTATTGTACCGAACACTAACCTTTTCATTGAAAAAAATTTTACTAGAGATGCTCAGAGTGGACGTGAGTCTGTGTGTTGGTCAGGTTCTAAACTTGCTGTTATCGTTTCTCCAAAATTTGAATATTCCAGTGGTGCACTCAACCATATCAACGAGCGCTATCAGCTTTGCCGGTATGGTGACAAAGAGggggaaggtcctcctctcaccatggtccacatttttgactatccagccgagttttcggacgacccagttaaacaggtcctctccggttttggtgaagttagaaatgttaaacgccagaaatttatcggtcgacctgatatcgagacaggcacacgtctggtgttaatggcctttcgtgtaataccgcctcgtctagtgagcattcatggatatttttgtcgcctttggtccaaggggcaaccgatcatttgcaacttgtgcaacgtacaaggccacaaatccaccgactgtcccaattgggacaaatgtaggcgctgtggcgtatctgggcatttcgcccggtcttgccccaatccgtggggctctgagaggtctagtaatacgggtgtggccccggtgggggagtttccgccgctttcatcggcgactcgccctcggtctgcaggacatcccccttcaacttctgcttcggcttctgctgctgttagctccgaggggtttgatagtattgtggatgatgtttgtgactcttacctggacggttgtagtgttttctccggggtctctgacgactcagacagtgatattgatttttccagcgtcgggtctgttaaaagtcctgtcaggcctgcgagcatggagacccgacgcgtcgaaaacaccccatcacatgatgcggATGAGAGTGCTATCACACCATCTACTTTGCAAGATATGATGGAAACCCCACGAGCAATGGGGGAGCTCAAACATCGGCAAAATGAAGACATGAAATCCAGTCAACCAGAGCATTTATCACCCATTGTGGGCGAAAATATGTTGCAAAAAATTTCTGAATCAACTTCCAAGTCGCCACAAGAATTAAATTCAAGGGACCAAAACCTGATGCAAAAACCACCTGAAGAGATTCCTAGTATACATACTGTAAACAGAAAAACATACCCAAAACCCGCTCAATGGATTAAGAAGTCTCCCCAAGGGGTACCCCTGAAAGACGGAAATCAAGGACAAAAACCTGCCCAATGGATTACCAGTTCGCCACCAGATATACCTCCTAGGGACCAAAACATAATGCAAAAACCTGCTGAATGGTTAACCAATTCGCCACCTGGGATTCCCAGGGTGGGTGGAAGCACAGAACCAAACCCTCCAGAACGGATCAGTGCCGATTCACCCCAAGTATTACCCTTAATGGACGTAAAAACATGGCCAAAGGCTGTAGACCCGTTGACCAGTTTGCCACAAGCAACAGCCTCAATGGACTTGGACGCTAACATGATACAGAGACCTTCCGCCGTGCGGTTTACTGATTTACCACGAGCAATGCCCACAGTGAACGGAAATACACGACAAAATCTTGGTGAGTGGATTACCGATTCCCCGCTAGGAAAACCCAGAGTGAACGAAAGTACAATGCAAACAACTCAATGGTTTACAAATTCGCGAGAAGGAATAACAGAGACTGAAAATTTGAACAAAGGTTTACCATCTCGGATGAAAGAAGAAACTGTTCCTGGAAAGGTGATGGAAAAAGCAAGGAACTATCCTCTGAAATACGAGAGCCCGGAGAAAAATACCCTGGAAAAGGAATACAAAAGAATTTTGAATAATGCTTTCACGGCAGCTAATCATGGACAGTCCGAGCCATCTCCCAATCCAACAGAACTTGCCGATATCTATCCTTCAACTTCACAGCATACTGAGGTCACCTTGTTATGAACCGTTATCAATGAGATCCTATTTTTGAACTTATGGTGAAAACGTTGTTCATGAAACATGCTTCTCCACTGACCTTGAAGATTTTTAAATCCCCCAACGTTTCTTTTTCTGTGCTTTCACCTCAATAGAAAATGGTTCAAAGAAATAAATGCATTTATGACGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan