Gene detail

Detailed information of anas_s0298.g5.t1 in Acropora nasuta

Genomic Location: sc0000298_pilon:91799...107135
NR annotation: XP_029180160.2, GTP-binding protein RHO1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

anas_s0298.g5.t1

CGTCTTTCAAACAAAACATGTTTTCCTTCTCTAGTGTCATCAGTCCGTGATGGTTATCGCAAACATGGTGAAGCCCTTAGTAAAGATGAACTGTTTACAAAGAACTACAATGGGGAACAAAAACGGGAGGAAATCACAATATCGGTGAAGCGTCAACGGGCACCAAAAATCATCTTTGAGGATGTTGTCGCGCAGGCGAAACACGCTACCAGTGATATTAGAACCGACTTTAGATCACGAACATTTAACATCTTTACTGGAAGAGGAGACGTACCGAAGACACTCAAGTGACGACTCTGTTTTACTTGATCAGGTTGACGGTGGAAAAAGAATGTTACTTGACTCAGAGCGGATGTGCAGTCATCCAAGCAAGCGTTACAAGCTGACAGTAGTGGGAGATGAACAATGTGGGAAAACAAGTTTGCTTAATGCACTTGTCAAGAGTGACTTTGAGTGGGTCCCTGAAATAAATGACGCATGCCCAGGAATACCTTACTTGCTGATTGGCTGCAAGAATGACCTGCGCTCTGACACTGCGCTTCAATATTACCTGACAGTACCACGACAAGAAGAGAGCATCAGCAGAGGCAAGGCGCTCGATGTCGCTCATTCTACGATGGCCCGCGATTATATCGAATGTTGCGCCAAGACGCGCTGGAATGTCAAAGAAGTTTTTAAGAGCGCTGCTGATGCCATACTTTTCAAGAACGACGACAAAGTCGACGAGATCAAATCTCAATCTGTACTTAAGAAGTTTTCTTGGTTCTCTCGGAGGTCTTCGGGTTCTGATATTGCTGACTGTAATACCATTCCTCGTTCGCCGTCCGCAAATCGAAGACTGTCTTTGTTTTCAACAAGTTGATAGATCCTATCTAAATACAGTGTTTCCATGGTCCGTTAACGGACAACGAATATCGGCTCATGGTGATGCCGTAGCGTCAAACTAACATCAGTCTCCACTTGTGAGGAATTCATGGAAGTTTGCGCCAGTTGAATAACGCTGTGCCTTGTTTCAAGTAGCGGCCACCACCTTAGGTACTTTCTTTCATCAATCAGTGCGTTTTGACGAAAGGAGACCTCTCGAAGGAattggggacctttagattctagggcaaggacgagaaagagtatgaaattcgaccgcccgtttttagctaaaatttattactcggatgattaatcttcctatttgtcagcagcctgggtctagattgctcagttattcgtattgatgctaagtgagccttgtcctgctcgaataatgccacaactgccaccatgttggggacgtgttttgacacacgacattttcgcaaaatgccgctggtttgtacgcgctcactgtttttctatgagaaaatctcgttctcgatcaagccctcgtcctagaatctaaaggtccctatagacgctattcataaatggctgccaattcattattcttttgtccttgtgcatgtaaattagcctaccaagcctcagtcaggtgctaaattgaaaagaattcttgctctagggcgatgtttggtaggctaatttgcacaataacagaacaaaaataaaacagccgccatttatgaatagggtctatTATAAGCGCGAAGACGAAGAGATTAGAGGAATTCATAAGTTGAGCGGCTCTACAGTAGAACATGCTATTTGCGTGGGTATACAGATGACTTGGAGACATGTGCATCACTGAGCTTGTGGACTTCAGATTGTCGATTTCTACCTTCATGTTGGCCACAAAATAAGGAAGAAACCATGTATAAAGTGGTTGGAAGGGGGGAGGGTGGAGGGCATAGCCGGGTGGATAAGGAGGCCACGGAACATGGAAACGCACGGGAGAAGCTACGGGATCTCTTGACGCCCGGGCGAAACATGGTACAAAACGCTGCCAAATATTTATTTCTAAAAATAAAGACTTTGATCAAACCTTCAAAAATTCTACACTCGTTTCTAAGAATGTCCACTTTTTCATAACTATGTACAACATCAGACAAAATTGAGTATGGTGCCTTGTGTGGCTTCGTATTTTTTTTAAAGTAGTCTTTTGACGCTTAACACCTCGCTTGGTTACACaataataataataataataataataataataataataataatagtaatCtttaatatttctatagcgtgtgtatgtagcatatgaatatgatcaaatgcgctttacaattctagaggaaatcaaatcaacattgcccaaatcactattttacaattattattAACAAATCAAATAAATTCAAATCAAATCAAATGTTGGTTTTTGATGAGAGGGGAAAACCGGAGTACCCGGGgaaaaacctatcgcggccgagtagaggaccaacaaactcaatccacatatgacaccgggtgcggaaatcgaacccgggccacattgatggaaggcaagtgctctcactgctaggcaaaccctgccaccTGTGTGATACATATGTTACCTATGATTGTTTAACACTTGAACTGAAATAATAACTGCACCGGTACGTGTACTCAGGTATCCGAGGCTAAAAAAGGTAGGCCACATGA

Protein

Uniprot

Uniprot term	Description
Q9HBH0	Rho-related GTP-binding protein RhoF OS=Homo sapiens OX=9606 GN=RHOF PE=1 SV=1
Q3ZBW5	Rho-related GTP-binding protein RhoB OS=Bos taurus OX=9913 GN=RHOB PE=2 SV=1
P62745	Rho-related GTP-binding protein RhoB OS=Homo sapiens OX=9606 GN=RHOB PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04513	RHOA; Ras homolog gene family, member A	-	GTP-binding proteins	ko04031	deepkoala