Detailed information of anas_s0303.g27.t1 in Acropora nasuta

Genomic Location: sc0000303_pilon:285457...319175
NR annotation: XP_015753598.1, PREDICTED: neurogenic locus Notch protein-like isoform X4 [Acropora digitifera]
Species Acropora nasuta · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O00468Agrin OS=Homo sapiens OX=9606 GN=AGRN PE=1 SV=6
A2ASQ1Agrin OS=Mus musculus OX=10090 GN=Agrn PE=1 SV=1
P25304Agrin OS=Rattus norvegicus OX=10116 GN=Agrn PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000507 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679
all species →
I-setImmunoglobulin I-set domainDomainInterproscan
PF00095
all species →
WAPWAP-type (Whey Acidic Protein) 'four-disulfide core'DomainInterproscan
PF00050
all species →
Kazal_1Kazal-type serine protease inhibitor domainDomainInterproscan
PF07648
all species →
Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan
PF00014
all species →
Kunitz_BPTIKunitz/Bovine pancreatic trypsin inhibitor domainDomainInterproscan
PF00086
all species →
Thyroglobulin_1Thyroglobulin type-1 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan
IPR020901
all species →
Conserved_siteProteinase inhibitor I2, Kunitz, conserved siteInterproscan
IPR013098
all species →
DomainImmunoglobulin I-setInterproscan
IPR036880
all species →
Homologous_superfamilyPancreatic trypsin inhibitor Kunitz domain superfamilyInterproscan
IPR036645
all species →
Homologous_superfamilyElafin-like superfamilyInterproscan
IPR036857
all species →
Homologous_superfamilyThyroglobulin type-1 superfamilyInterproscan
IPR002350
all species →
DomainKazal domainInterproscan
IPR008197
all species →
DomainWAP-type 'four-disulfide core' domainInterproscan
IPR000716
all species →
DomainThyroglobulin type-1Interproscan
IPR036058
all species →
Homologous_superfamilyKazal domain superfamilyInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR002223
all species →
DomainPancreatic trypsin inhibitor Kunitz domainInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR001134
all species →
DomainNetrin domainInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR008993
all species →
Homologous_superfamilyTissue inhibitor of metalloproteinases-like, OB-foldInterproscan
IPR003645
all species →
DomainFollistatin-like, N-terminalInterproscan
IPR052132
all species →
FamilyWAP, Kazal, immunoglobulin, Kunitz and NTR domain-containingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45938
all species →
ACP24A4-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004867
all species →
Molecular Functionserine-type endopeptidase inhibitor activityInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005576
all species →
Cellular Componentextracellular regionInterproscan
GO:0030414
all species →
Molecular Functionpeptidase inhibitor activityInterproscan
GO:0005615
all species →
Cellular Componentextracellular spaceInterproscan
GO:0007179
all species →
Biological Processtransforming growth factor beta receptor signaling pathwayInterproscan
GO:0048019
all species →
Molecular Functionreceptor antagonist activityInterproscan
GO:0050431
all species →
Molecular Functiontransforming growth factor beta bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for anas_s0303.g27.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora nasuta tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora nasuta, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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