Gene detail

Detailed information of anas_s0358.g7.t1 in Acropora nasuta

Genomic Location: sc0000358_pilon:164694...194095
NR annotation: XP_022787044.1, uncharacterized protein K02A2.6-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

anas_s0358.g7.t1

atggaaatgtctaattcccaaaagcaAgcagtgatatcccttatagaaaaaaaaggaaaagatCgCactttccttgaaaactggagaccGatctctctggttaatgtggaTgctaaattaatgtctaaagttgtagctaacaggttaaaaaaagtactaccttgtattattcActataatcaaactggttaCgttcaggaccgctatattggtgagactgtacgatcaatttttgaTataatggaattcactgtaAAtgaaaatGttccTGgaatgctgatatttatCgatttCCAAAAAGCTTTTGACAGTCTTGAATGGGATTTTATTTTTGGTTGCTTAGAGGCCTTTAATTTTGGTCCAGATTTCAGCCGATGGGTTAAGACGTTTTACAAAAATATCCAAAGTTGTGTTATAAATAATGGTAATGTTTCTGATTATTTTTCTCTGGGACGTGGTGTTAGGCAAGGAGATCCCTTATCGCCTTACCTTTTTGTGTTAGCGGCTGAGGCTCTAGCAATTGCTGTTCGACAAAATGTACATATaaaaggcattCttgtagatggacaggaaacaaaattgctgcaatatgcagacgatatgactgcagtcctttcggaaattacatcggcccaggagctttttaaccttcttgactcttttaggacatcatcaggtctttctgttaattggtctaaaacagaagTCTCGCTTTACTTTCGATACCCCGTTGCTTACCTTTATTTTATCTTTTGGTATACAAAGGCTCACGGTCTAGTTCACGTTTTATGGAGTTATGGAGTTGTTCTTTACGAAATTTCTACAATAGgtggttcaccatacccacggatggagggcaggaaacttgcaaacttgcttcaacaaggatacaggatgccgaaaccagagcacgttgacgatgacttgtatcaaatcatgatgaattgctggcaaagtgaaccagaggccagaccatcattcagcgatttaacacagcagcttaaacgcatggaaaaccaacacaagCCGGCAGGAAGAGATCATGGAGTTGAGAACTGCAGTAGGCGTCGGAAGTGTGCGAAAACGTATCAAGGAAAAGAATGCACACATTACCACCACCCGCTGCTTCACAGGAACACTGCCGATAGAATCGGTGTAGCATCTTTGTCCAGCACGCACGAAGCTATTTTACCAGTGGTAACAGTAAAGATTCATGGTCAGAATGGTCTTCAAAAGCTCGAGTCAGCCTTATCAGGGAATCAACAACAGCTCAACTGGGACTGCAAGGAAAGGACACCTCAGTTACTATTACCAAAGCAGGGGAAGAGGAGGAGACTATCAATACAAAAGCTTACACGGTTCTTGTGTCATCAATTGACCGTACGGAGATTAAGGTTTAAATTAAGccagtcaagaagcttcaaacctttcgtatctgcaagagttcgtgaaattcaaaataatttagacccgaaaagatggagacatatcccaggagaattgaatgtagcagacgatttgtcccttggcataccagtggaagagttaaaccagagatggcgccatggaccagagttccttcgactaccagaattagagtggccccaagaagtatcccaggtgctccccaaGCCGTGGCAGCAAGTCGCATCAGATCTCTTTACTTTCGAGAACCGAGACTACCTTGTGTTAGTTGATTATTTTAGCAACTTCATTGAGTTAGATTATCTTCCAGATACCTCTTCCCTAACAGTCATTCGCAAACTGAAGATGCACTTTGCTCGTCATGGAGTGCCAGATTGTCTAGTTTCTGACAATGGCCCACAGCATATAGCATCAGAGTTTCGACGATTTGCAGCGACATGGAAGTTCAAGCATGTTACTACCTCACCGCACTATCCTCAAGCCAATGGAATGGCTGAAAGTGCAGTTAAAACATGCAAATCAATTAGAAAGAAATCTCTTTTATCGAAGTCAGATCCCTATCTTGGTTTGTTGGATCCCCGCAATACTCCTACAGCCGCAACAGGTATGTCACCTTGCCAACGTCTTTTTCGACGTCCAACCAAGACGCTCCTACCTCTCTCGGAATCTCTACTCAAGACTGACAAATCAGTAAGTGATTTTCTCAAAAGGGATCGTGTCAGGCAAGCAAAGTACTTCGACCAGCACTCCAAACACCTTTCAGAACTCAAGTCTGGTGACTTACTGCGTATGAAACTCCCTGGTAAAACACAGTGGTCACAAGCGGTTGTTACCTCTAAAATTGCTCCTCGCAGCTACAAAGTTGAAGCCAATGGAAAGGCATATAGGCGAAACCGCAAGCAGTTACGCTCTTCTAAAGAGCACCTACAAGAATCAACCCTCGAAATGGACGAAGACGACCACATCGACGTAAACGCTCTGCCAGAAAAGACCCAGCTCTCACAGGTAGCCTTACCCAATGCTGAGAAACAGACAGCACTAACCCCTCTTAGCCTTCAGCCATCCTACACATCGCGCACACCAGAGAAGAGTAAAAAAACACCTCAAGTACCCATAACAAGTGGAACAAGgtcaaaaaggtgctgttacgttggcaagaatcaagcctcttcctga

Transcript

anas_s0358.g7.t1

gaaccctttgtaaactgtgctaatgaatgttttgaaaatatggaaatgtctaattcccaaaagcaAgcagtgatatcccttatagaaaaaaaaggaaaagatCgCactttccttgaaaactggagaccGatctctctggttaatgtggaTgctaaattaatgtctaaagttgtagctaacaggttaaaaaaagtactaccttgtattattcActataatcaaactggttaCgttcaggaccgctatattggtgagactgtacgatcaatttttgaTataatggaattcactgtaAAtgaaaatGttccTGgaatgctgatatttatCgatttCCAAAAAGCTTTTGACAGTCTTGAATGGGATTTTATTTTTGGTTGCTTAGAGGCCTTTAATTTTGGTCCAGATTTCAGCCGATGGGTTAAGACGTTTTACAAAAATATCCAAAGTTGTGTTATAAATAATGGTAATGTTTCTGATTATTTTTCTCTGGGACGTGGTGTTAGGCAAGGAGATCCCTTATCGCCTTACCTTTTTGTGTTAGCGGCTGAGGCTCTAGCAATTGCTGTTCGACAAAATGTACATATaaaaggcattCttgtagatggacaggaaacaaaattgctgcaatatgcagacgatatgactgcagtcctttcggaaattacatcggcccaggagctttttaaccttcttgactcttttaggacatcatcaggtctttctgttaattggtctaaaacagaagTCTCGCTTTACTTTCGATACCCCGTTGCTTACCTTTATTTTATCTTTTGGTATACAAAGGCTCACGGTCTAGTTCACGTTTTATGGAGTTATGGAGTTGTTCTTTACGAAATTTCTACAATAGgtggttcaccatacccacggatggagggcaggaaacttgcaaacttgcttcaacaaggatacaggatgccgaaaccagagcacgttgacgatgacttgtatcaaatcatgatgaattgctggcaaagtgaaccagaggccagaccatcattcagcgatttaacacagcagcttaaacgcatggaaaaccaacacaagCCGGCAGGAAGAGATCATGGAGTTGAGAACTGCAGTAGGCGTCGGAAGTGTGCGAAAACGTATCAAGGAAAAGAATGCACACATTACCACCACCCGCTGCTTCACAGGAACACTGCCGATAGAATCGGTGTAGCATCTTTGTCCAGCACGCACGAAGCTATTTTACCAGTGGTAACAGTAAAGATTCATGGTCAGAATGGTCTTCAAAAGCTCGAGTCAGCCTTATCAGGGAATCAACAACAGCTCAACTGGGACTGCAAGGAAAGGACACCTCAGTTACTATTACCAAAGCAGGGGAAGAGGAGGAGACTATCAATACAAAAGCTTACACGGTTCTTGTGTCATCAATTGACCGTACGGAGATTAAGGTTTAAATTAAGccagtcaagaagcttcaaacctttcgtatctgcaagagttcgtgaaattcaaaataatttagacccgaaaagatggagacatatcccaggagaattgaatgtagcagacgatttgtcccttggcataccagtggaagagttaaaccagagatggcgccatggaccagagttccttcgactaccagaattagagtggccccaagaagtatcccaggtgctccccaaGCCGTGGCAGCAAGTCGCATCAGATCTCTTTACTTTCGAGAACCGAGACTACCTTGTGTTAGTTGATTATTTTAGCAACTTCATTGAGTTAGATTATCTTCCAGATACCTCTTCCCTAACAGTCATTCGCAAACTGAAGATGCACTTTGCTCGTCATGGAGTGCCAGATTGTCTAGTTTCTGACAATGGCCCACAGCATATAGCATCAGAGTTTCGACGATTTGCAGCGACATGGAAGTTCAAGCATGTTACTACCTCACCGCACTATCCTCAAGCCAATGGAATGGCTGAAAGTGCAGTTAAAACATGCAAATCAATTAGAAAGAAATCTCTTTTATCGAAGTCAGATCCCTATCTTGGTTTGTTGGATCCCCGCAATACTCCTACAGCCGCAACAGGTATGTCACCTTGCCAACGTCTTTTTCGACGTCCAACCAAGACGCTCCTACCTCTCTCGGAATCTCTACTCAAGACTGACAAATCAGTAAGTGATTTTCTCAAAAGGGATCGTGTCAGGCAAGCAAAGTACTTCGACCAGCACTCCAAACACCTTTCAGAACTCAAGTCTGGTGACTTACTGCGTATGAAACTCCCTGGTAAAACACAGTGGTCACAAGCGGTTGTTACCTCTAAAATTGCTCCTCGCAGCTACAAAGTTGAAGCCAATGGAAAGGCATATAGGCGAAACCGCAAGCAGTTACGCTCTTCTAAAGAGCACCTACAAGAATCAACCCTCGAAATGGACGAAGACGACCACATCGACGTAAACGCTCTGCCAGAAAAGACCCAGCTCTCACAGGTAGCCTTACCCAATGCTGAGAAACAGACAGCACTAACCCCTCTTAGCCTTCAGCCATCCTACACATCGCGCACACCAGAGAAGAGTAAAAAAACACCTCAAGTACCCATAACAAGTGGAACAAGgtcaaaaaggtgctgttacgttggcaagaatcaagcctcttcctgacactgctgttatatgttctgtaaaaggtttttaccttttgactgatgatacctgtaagactttttctccctggggcattcaataaaaatatatttcagtt

Protein

Uniprot

Uniprot term	Description
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P11369	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR052343	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan