Gene detail

Detailed information of asel_s0003.g167.t1 in Acropora selago

Genomic Location: sc0000003_pilon:2098203...2109601
NR annotation: XP_029201996.2, integrator complex subunit 7-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0003.g167.t1

ATGGCGGCTGCGTTGAGCTACGGATCCTTCGCCAGCTTTGGCGAAAAGTTTTCCAGTAATTCCGATAGCCTGCAAGATGCAAACACTGCGCTTGCAGAGCTTGACAAAGGGCTTCGTTCAAGCAAAACAGGAGAACAGTGTGAAGCCATTGTTAGATTCCCTGGCTTGTTTGAGAAATATCCCTTTCCAATATTGATCAACAGTGCTCTGTTGAAGCTTGCCGATGTGTTTAGAGTGGGGAACAATTTCCTGAGGCTTTGCATCCTTAAGGTGACTCAACAAAGTGAGAAGCATTTGGATAAAGTTTTAAATGTTGATGAATTTTTGAAGCGAATTTACTCAGTCATTCACTCCAATGATCCAGTCGCAAGAGCAATAACTGTGAGATTTCTTGGGAGCATTGCTTGTCTTGTGTCAGAAAGAAAAAATGTACATCACAGTATCAGGAGCAGCTTAGAGTCACATGATGAAGTTGAGTTAGAAGCTGCTATATTTGCAACTGATAAGCTTTGCTCGCATTCAAGGGAGTTTGCATCTGGTCTTTACAACAAACTATCTCAATTAATTGAAGGGCTAAGTACACCTGTGGAAATGAAACTCAAGTTAATCCCAATTTTCCGCCATATGCATTATGATCTTCATTTAACAGAAAAGGTCCACGAGTTGTGCTCCTCTCTGTTGATTTCCCATCCAGCTTGTAACTTTGTTGTTGTTACCCTCCATACGTTATCTTGTCTTGCAGTTTCTTGCGTTATTGACATTCCCAAGCAGGCTGAACTGTTATTAAGATACTTGAGAAATGATCCAAGAAGAGTCGCCAAAAACCATGCCCTCTCAGATCTTAGAATGTTGGCAAGTGGTGCACCACACATGTGGAAAGTTGAGCATGTTGAAGATCTTTGTGAGTTTATGCTCAGCTGTTGTTATGATTTTCTCACACTTTCTTCCATGAGAGTCTTGGTGACTTTGTCAAGATCTGAAGCAGTTGACATTTTGAATAATGGCAAAGTGCTTGAAGTATGTTGTAAGGAGTCCAATTCGTGCAATTCAGCTGTGGCTGCTTTAGCAACAGAGCTTCTTATCAATATCGCAGTAGCAGCTGTAAGGAATGACAAGGAAGATGTTTCACTCTGTGAGGAAGCGCTGACAGCAGCTGAGACATGTGCAGTTGTTTGTTGTGTTGGTGAACAAGTCCAGTCACTTAAGGTTTGTTTGTCAGCTATGAACAACTTAGTTGATAGCTATCCTGTAGCAGCTGCTTCTCTTGTGGAGACATTAACAAGCCTTCTCCCCTCTTCATCAGGTAGTGTGGGACTTGCGTTATGTCATACATTAGTCACCATTGCAACCCAAGTACCAAATGTCCTTCAACCTTTAAGTGAGGAAATTGTTTCGCAGTTTGCCAAAGTCATCATTAATGCTGATGATAACAACACAGAATCAAAGGATCTAGTGGTTGGCATAGCAACTTTGATTTTCCAGTCATGTCAGGGTGCATTGTGTTACAAAGAAGAGAGAGAAAAAATAGAAGATTTGCTTCTAGAACAACTGGGAAAGTTAATGACATCATCAAGATACTGGACCATGTTCAGAGTTGGCAAGCAAGCTACTAGACTGGGTTTCCATAGTCTTGCAGCAAAAATGTTTGGAAACTTAACATCCAAGGTTGCTTCTGAACATTTCCACTTCTGGCTTACTGCATTGAAGTTGTTCTGTGAGGCTGAGAGCCTGTTGAGTGTTAAATGTGATACTCAATTGGCACTGTCCAGACAGATATGTGATGCCATTGCAAAGTATCATAAAGGCATTACCACACTCAAGGCCTCCGTGTCATCAAATCATCAATTTTCCTTCCAGTGTAGATATACAAGTTTAAGAGCTGAAGTGCTGCAAGCACACAACCTTCTCCTTTCTTCTTGTGCAACAATAAAATCCTGTCCTCCTCCTGCAATAGCCAGGGCTGTTGCCATGGCAACTGGTCAAGACGTGCAACGACTTAGTCATTTTACCGCTCAGATGTCAGAATGCAGCAAACTCTTTCGTAGTCTTGGTGAGAGATATGGACAGTTGTACCAGTCATCATTCAACGCTGATCCTGTTAGTCTTCAAAATATTGAAACCCTCCAGCAGAGCTGTCTTTTGATATCGCACAGTATAAATGTATTAATGAAAACATCTCAGCCAAGTTCTTTACGAGATCAGAGAAGCACTTCTCATAAATCAAATGCCCTTGGTCACAGTCAGATAACTCTAGCAAGTGCAGAGATTTTAGAGACTGTGGAGAGCCTTGCAAATCAGTTGGAAGCCCTTCCAGTCTGTCATCTGCAAACTGATTATCTTTTGAGAGCTTCCATGACAATTCTCAAAGTGCCTTTCATTTATCCAAAGTTCTTTTTCTGCAGCCAGCAAGCCACAAATATCAAGCTAGCACTTTCTCCTTCACCACGGATTCCTTCAGAGCCTATTTCAGTCACACTGGATACGCAGTTTGTTCTCAAGGTAGAAGGAGTGATTGAACATGGTCAACATCCAGGTCTTTATCGTAAGGTGCAGTCAGTTTGCCTGTCAGTGAAATGGCAAGCTGAAGATCAAAAGCAACAAGTTTCAGACATTAAGTCTCCCTCAGAAATTGTAACCTGTTTGGAACAGACTGTGATTCCTCGTCATGACTATTTTAGTGCCCAGTTCCTGCTCTCATTCAATATCCCAACCCTTTATCACGTGACAGTGTACTCCAGCGTGATTGACAGGTCGGGAATATTGTGGAATACAGGGTCCCAGAGTTCGTTGCAGGTCAAGGCATCAGATTCTATGGCCAGGAAGCAAAGAACTTCAAGATCTTAG

Transcript

asel_s0003.g167.t1

AGTAATTACTGTTGAATTGTGGGGTATGTTTTTCAAAATGGCGGCTGCGTTGAGCTACGGATCCTTCGCCAGCTTTGGCGAAAAGTTTTCCAGTAATTCCGATAGCCTGCAAGATGCAAACACTGCGCTTGCAGAGCTTGACAAAGGGCTTCGTTCAAGCAAAACAGGAGAACAGTGTGAAGCCATTGTTAGATTCCCTGGCTTGTTTGAGAAATATCCCTTTCCAATATTGATCAACAGTGCTCTGTTGAAGCTTGCCGATGTGTTTAGAGTGGGGAACAATTTCCTGAGGCTTTGCATCCTTAAGGTGACTCAACAAAGTGAGAAGCATTTGGATAAAGTTTTAAATGTTGATGAATTTTTGAAGCGAATTTACTCAGTCATTCACTCCAATGATCCAGTCGCAAGAGCAATAACTGTGAGATTTCTTGGGAGCATTGCTTGTCTTGTGTCAGAAAGAAAAAATGTACATCACAGTATCAGGAGCAGCTTAGAGTCACATGATGAAGTTGAGTTAGAAGCTGCTATATTTGCAACTGATAAGCTTTGCTCGCATTCAAGGGAGTTTGCATCTGGTCTTTACAACAAACTATCTCAATTAATTGAAGGGCTAAGTACACCTGTGGAAATGAAACTCAAGTTAATCCCAATTTTCCGCCATATGCATTATGATCTTCATTTAACAGAAAAGGTCCACGAGTTGTGCTCCTCTCTGTTGATTTCCCATCCAGCTTGTAACTTTGTTGTTGTTACCCTCCATACGTTATCTTGTCTTGCAGTTTCTTGCGTTATTGACATTCCCAAGCAGGCTGAACTGTTATTAAGATACTTGAGAAATGATCCAAGAAGAGTCGCCAAAAACCATGCCCTCTCAGATCTTAGAATGTTGGCAAGTGGTGCACCACACATGTGGAAAGTTGAGCATGTTGAAGATCTTTGTGAGTTTATGCTCAGCTGTTGTTATGATTTTCTCACACTTTCTTCCATGAGAGTCTTGGTGACTTTGTCAAGATCTGAAGCAGTTGACATTTTGAATAATGGCAAAGTGCTTGAAGTATGTTGTAAGGAGTCCAATTCGTGCAATTCAGCTGTGGCTGCTTTAGCAACAGAGCTTCTTATCAATATCGCAGTAGCAGCTGTAAGGAATGACAAGGAAGATGTTTCACTCTGTGAGGAAGCGCTGACAGCAGCTGAGACATGTGCAGTTGTTTGTTGTGTTGGTGAACAAGTCCAGTCACTTAAGGTTTGTTTGTCAGCTATGAACAACTTAGTTGATAGCTATCCTGTAGCAGCTGCTTCTCTTGTGGAGACATTAACAAGCCTTCTCCCCTCTTCATCAGGTAGTGTGGGACTTGCGTTATGTCATACATTAGTCACCATTGCAACCCAAGTACCAAATGTCCTTCAACCTTTAAGTGAGGAAATTGTTTCGCAGTTTGCCAAAGTCATCATTAATGCTGATGATAACAACACAGAATCAAAGGATCTAGTGGTTGGCATAGCAACTTTGATTTTCCAGTCATGTCAGGGTGCATTGTGTTACAAAGAAGAGAGAGAAAAAATAGAAGATTTGCTTCTAGAACAACTGGGAAAGTTAATGACATCATCAAGATACTGGACCATGTTCAGAGTTGGCAAGCAAGCTACTAGACTGGGTTTCCATAGTCTTGCAGCAAAAATGTTTGGAAACTTAACATCCAAGGTTGCTTCTGAACATTTCCACTTCTGGCTTACTGCATTGAAGTTGTTCTGTGAGGCTGAGAGCCTGTTGAGTGTTAAATGTGATACTCAATTGGCACTGTCCAGACAGATATGTGATGCCATTGCAAAGTATCATAAAGGCATTACCACACTCAAGGCCTCCGTGTCATCAAATCATCAATTTTCCTTCCAGTGTAGATATACAAGTTTAAGAGCTGAAGTGCTGCAAGCACACAACCTTCTCCTTTCTTCTTGTGCAACAATAAAATCCTGTCCTCCTCCTGCAATAGCCAGGGCTGTTGCCATGGCAACTGGTCAAGACGTGCAACGACTTAGTCATTTTACCGCTCAGATGTCAGAATGCAGCAAACTCTTTCGTAGTCTTGGTGAGAGATATGGACAGTTGTACCAGTCATCATTCAACGCTGATCCTGTTAGTCTTCAAAATATTGAAACCCTCCAGCAGAGCTGTCTTTTGATATCGCACAGTATAAATGTATTAATGAAAACATCTCAGCCAAGTTCTTTACGAGATCAGAGAAGCACTTCTCATAAATCAAATGCCCTTGGTCACAGTCAGATAACTCTAGCAAGTGCAGAGATTTTAGAGACTGTGGAGAGCCTTGCAAATCAGTTGGAAGCCCTTCCAGTCTGTCATCTGCAAACTGATTATCTTTTGAGAGCTTCCATGACAATTCTCAAAGTGCCTTTCATTTATCCAAAGTTCTTTTTCTGCAGCCAGCAAGCCACAAATATCAAGCTAGCACTTTCTCCTTCACCACGGATTCCTTCAGAGCCTATTTCAGTCACACTGGATACGCAGTTTGTTCTCAAGGTAGAAGGAGTGATTGAACATGGTCAACATCCAGGTCTTTATCGTAAGGTGCAGTCAGTTTGCCTGTCAGTGAAATGGCAAGCTGAAGATCAAAAGCAACAAGTTTCAGACATTAAGTCTCCCTCAGAAATTGTAACCTGTTTGGAACAGACTGTGATTCCTCGTCATGACTATTTTAGTGCCCAGTTCCTGCTCTCATTCAATATCCCAACCCTTTATCACGTGACAGTGTACTCCAGCGTGATTGACAGGTCGGGAATATTGTGGAATACAGGGTCCCAGAGTTCGTTGCAGGTCAAGGCATCAGATTCTATGGCCAGGAAGCAAAGAACTTCAAGATCTTAGTGACAAGTGTGAGAAGAATTGAAAGAATGGTACGGAAAGGATTTGATCTAGCGCGTATTCTCCCCACTATGATCCCGTGAAACATACGTGACCACACAAAGATACACTATCACGTACTAGAAACCCGAACTGAGCTCGAACCTGACCTTTGCTATAACTGCGGGTATTAAAAAGAGAAAAAAACATGTTACGTCTTGCCCTAGGGTTTTATCCTTTTCTTTTTTTTTCGTGCTGAATCTTGATGCCATTTGACTAGAGCGAATGACAGGGGAAACCCCCAACACGAATTGCTGAAGTTAACATAATTAAAAATCTGCTGATGAAAGTGAGCAGTTTTGATTTTTTATATTACCGTATTTGGTTGGCAAATGAAATGAAAATTGAAACTGCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZL91	Integrator complex subunit 7 OS=Gallus gallus OX=9031 GN=INTS7 PE=2 SV=1
Q9NVH2	Integrator complex subunit 7 OS=Homo sapiens OX=9606 GN=INTS7 PE=1 SV=1
Q7TQK1	Integrator complex subunit 7 OS=Mus musculus OX=10090 GN=Ints7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003699 (this species only)

Pfam domain

No Pfam domain signature was detected for asel_s0003.g167.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR033060 all species →	Family	Integrator complex subunit 7	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13322 all species →	C1ORF73 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13144	INTS7; integrator complex subunit 7	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0003.g167.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

22TPM > 0

1Conditions

19.7Max TPM

13.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	22	13.57	19.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	19.73
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	18.65
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	17.81
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	16.50
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	16.47
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	15.33
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	15.29
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	15.17
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	15.10
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.91
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.82
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.75
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.72
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.71
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.66
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	13.53
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	13.24
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	13.20
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	12.36
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	11.73
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	11.72
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	11.30
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.