Gene detail

Detailed information of asel_s0004.g86.t1 in Acropora selago

Genomic Location: sc0000004_pilon:879021...896992
NR annotation: XP_029198545.1, ATP-binding cassette sub-family D member 3-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0004.g86.t1

GGTGCAAGCAAAATGGTGGGCATATTAAGTAAGATCGCACCTTCTTATCAATGGTTTAACAACACTAAAACATCAGGGATCGTGGTTGCAGCTGTTGGGACAGGAATCCTTATATTATGGAGGAAAAAGCTGAACGATCTTAAAAGAAAAAGAAAAGATGACCCAGACGATTTACATATCTCCCTGGCCGAGGAGAAAGCTGCTAAGAAAGAAAAGGCTGCTGTGGACGCATTATTTTTTAGTAAGCTGATGAGAATCTTGAAGATAATCATTCCTGGATTTTGGACTCCAGAGGCTGGTTACCTGACACTTGTGGCATTGTCGCTCATAGCGCGGACATACTGTGATGTATGGATGATAAATAATTCTACAGCCACTGAGCGATCCATCATCAGTGGGGATCATGCAGATTTTAGGAAAAACCTTACTGAGTTTGTTTTTGCCTTGCCATTTATATCTGTAATTAACCAACTCATGAAGCTTGGGCTGAATGAACTAAAACTGAGATTTCGTGCAAGACTGACGAGACACTTGTACGGACAGTATCTGAACTCATTCACTTTCTATCGAATGAGTAACTTGGATAACAGAATTGCAAATGCAGATCAACTTCTTACTCAGGATGTGGATAAATTCTGCAACAGTCTTGCTGAACTGTATTCCAATGTTAGCAAGCCATTGCTTGATATTGCAATTTACATCCAGAAACTGACAGGAGCAATTGGTATTCAGGGCCCAGCTCTCATGCTTGGGTACATGGCTGTCTCAGGACTCCTCTTGACAAGATTACGCCGGCCTGTTGGTAAAATGACAGCTGAGGAACAGCATCATGAAGGAGAATTCAGATACGTGAATTCCCGATTAATAACCAACAGTGAGGAAATTGCTTTTTATCAAGGAGGAAAAAGAGAAAGGTTGACTATGGAACATACTTTTCAAAGACTGGTAAATCATATCAGAGGATTCATTCAGTTTAAATTTATCATGGGAATCATTGACAATGTTATAGCAAAGTATTTGGCCACTCTAGTTGGTTTTTATGTTGTCAGTCGGCCATTTCTTGATAAGAACAGCACAAGGCATGCAAGCAGCACGCACAGTCAAAAAATGGAGGATTACTACAAAAGTGGTCGGATGTTGGTCAAAATGGCAGAAGCTATTGGACGTCTTGTTTTGGCAGGGAGAGAACTGGCGACTTTAGCAGGGTATACTTCTAGAGTGTCTCAGTTAATGAATGTACTGAAGGACCTCAACAAAGGAAAATACCAAAGGACCATGGTGTCAACTTCAGACAGTTTCAAAGAAGGTGACTCTAAATCAGATAGGATTTCAGCAGACTGTTTGGATCCCAGTAAAGGGCAAATAATTCAAGTTGACCATTTAATTAGGTTTGAAAATGTTCCATTGGTAACTCCTAATGGTGATGTCCTTATAAAAGAACTCTCATTTGAGGTCCGTTCTGGAATGAACGTGTTGGTTTGTGGTCCAAATGGATGTGGGAAAAGTTCATTATTTAGAATTCTTGGGGAGCTGTGGCCACTATTCGGTGGCAAACTTGTGAAACCAAACAAGAGTAAGCTGTTCTATATTCCACAGCGTCCGTATATGACTCTTGGAACGTTGAGAGATCAAGTGATTTATCCCGATACGAAAGAGGATATGCACAGGAAAGGATTCAGTGATCAAGATCTCGAAGAGTATCTGAAACAGGTTCATCTTGAAAACATTCTAGAGCGCGAGGGAAGCTGGGACGTAATTCAGGATTGGATGGATGTTCTCAGTGGTGGGGAAAAGCAACGAATTGCTATGGCTCGCCTGTTCTATCACAGACCTCAGTTTGCTATTCTTGATGAATGCACGAGTGCTGTAAGTGTGGACGTCGAAGGCTTCATGTACACTCGCTGCAGAGAGGTTGGCATAACACTGTTTACTGTTTCACACCGCAAGTCTCTATGGAAGTACCACGAGTATGTGTTGTACATGGATGGTAGAGGCGCGTATGAGTACAAGCCAATCGATTCCGCGATGACAGAATTTGGGTCTTAAAATATTTAGAGATGGTTGTGGCAAACCTTAGTTCTTCTCTTTCACGAGCAATAAACACCTCGCACTGACcgagggccgtactgtatgttatggaccgcgttttttccacttcattttatggcctgagtgtgaagtaggagaggacctggtcgtgaattgaggtggaaaaaacaaggttccgtaatcaacagtatgggccaagagaacgacgtaagtaagatgtttattgcatctcttggaaattgaatcgaaccagaatgtacacctcgaagtccgtattttagaatacggaccgctaaatcaaccaatcacagctaatttagtacttgagggatgtaatgaaacaaatgattGGAACGGTTGAATTCGAATCTTCGAAATTTCGAATTCAAAGAAAAGATTTTTCAAGTTTCATTTTCAACAATTCTTCTAAGGTCTTAAGTTTATTAGTGTGTTTTATAAATCCCTAAGTCGTTGTAGTGTTTAGGATCCCAGCCTGTCTTCTTTTGAGAAATTTTCTTTGATATTTGATCTGAAGCGAAGGTTTGTAACTCTGCGGACTGTAACATATGGACTAGGTACCAGTGTCTTCCGAAATATTGTTGAATTTTCACACTCGTTACCTAGGTTTCCTTTGGTTTGGTAAAGCAAGTGAAGTAATAACATCGTTAGCAATGTCATCATTGAACAGTATTCTCATATCTTTTCGTGATCGTAGTGAAGACATAAGACCTAATAGGACCTTTTTAATATCTTTCCTTGAGGTGCTCCATACTTCGAATATTTTATTTCGATGTTATAATTCGAGCTACTGAATGGTATGGGTCTATCCTTGGGGGAACGTTCGTGACGTCATATCAGAGTCATGGTTACGCAAAATCTTTTATGATGTTGATTTTTTACGTAAACGAAATAAAAAATTTGAAGGTAGGGGCACTTTTAACAAGTTACGTGCGTCGTCATATACAGATCTCTTTGAAGGTCTATTGTTCTTTTTATTGACTATTCACCTTACGGGTTTAACATGGGTTACTTTGACGATTGTCACAAAATTAGGATATATCAACTTGAAATTTTATTTACAATTTGTGATAGGCGTTGTGCGTTGCAAAGAATCCACCAATAAAACAAATCTTATTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28288	ATP-binding cassette sub-family D member 3 OS=Homo sapiens OX=9606 GN=ABCD3 PE=1 SV=1
P55096	ATP-binding cassette sub-family D member 3 OS=Mus musculus OX=10090 GN=Abcd3 PE=1 SV=2
P16970	ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus OX=10116 GN=Abcd3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001776 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06472 all species →	ABC_membrane_2	ABC transporter transmembrane region 2	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR050835 all species →	Family	ATP-binding cassette sub-family D	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11384 all species →	ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005324 all species →	Molecular Function	long-chain fatty acid transmembrane transporter activity	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0015910 all species →	Biological Process	long-chain fatty acid import into peroxisome	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0042760 all species →	Biological Process	very long-chain fatty acid catabolic process	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05677	ABCD3, PMP70; ATP-binding cassette, subfamily D (ALD), member 3	EC:7.6.2.4	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0004.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

22TPM > 0

1Conditions

28.5Max TPM

17.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	22	17.64	28.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	28.50
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	26.69
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	25.00
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	23.54
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	23.05
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	22.35
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	21.46
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	20.50
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	20.24
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	20.21
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	19.66
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	19.37
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	17.77
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	17.36
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	17.25
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	15.85
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.34
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.32
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.29
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.01
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.01
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	13.53
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.