Gene detail

Detailed information of asel_s0005.g2.t1 in Acropora selago

Genomic Location: sc0000005_pilon:25496...51579
NR annotation: XP_044183167.1, slit homolog 1 protein-like [Acropora millepora]
Species abbreviation ASELA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0005.g2.t1

ATGTTTGATATCACGAATTGTTTGAATTCTTTCAACAGTGCTCTCCATGGAAACAAATGGGACTGCAGCTGCGCTAGTGGATTGCACAGAGCATTATCAGACCTCACAAATGTAAAATTTATCCAGAAAGCCTATTGCGAAACCCCTGAGCTCGCGCGGAATCAGCCCCTTGATACCTTTAAATGTGCTGATACCGATCAATGCATGGAAGAAAATGATTGTGATGACGAAGCAGTGTGCACAAACACTTTGCAAGGATACAACTGCCGTTGTGCAACAGTAGGATTTACAGGAAATGGCAAAGAATGCACAGACATCGACGAGTGTGTAGGCGAGAATTTCTGCGCCCCAGTTGGTGGAAAGTGTGTCAACGAACAAGGAAAATACCGCTGCGAATGCTTAAAAGGATACGAAGGAAACGGCAAAATTTGCAAGGACATTGATGAATGCAAGAATCATGACTGCGGGGGGGAGGGTGTGTGTACCAACACACAGGGAAGTTTCAAATGCGACTGTGATTTCGGTTATGAGAAAAATGAAAAATACGTCTGCGTTGATAAAAACAGAGATATTTTGTCAAGAGATCGGTTCATATTTCCTTCACAGGATCAAATGCGTTCCAGTGTCTTACGGGGAATGCACCTTAAACTTTCTCCGGGATACTTCAAAGAATTCAAGAAAGTGGAAACTTTGGATCTTGGCAAAACGGGAATAAAGGAGGTATCAACAGAATATTTCAAGGGACTTAAGAAACTTAAATCTCTTGCTCTCGATGGAAACAAATGGGACTGCAGCTGCGCTAGTGGGTTGCACAGAGCATTATCAGACCTCACAAATGTAAAATTTGTCCAGAAAGCCTATTGCGAAACCCCTGAGCTCGCGCGGAATCAGCCCCTTGATAACTTTAAATGTGCTGGTGAGTACGTATTTATCGAGAGCCCAGCACAGGCAGCGTGTAATTTCATGCACAGAGCATTATCAGACCTCACAAATGTAATACTTGTCCAAAAAGCCTATTGCCAAACTCCTTCCGTCGTGCAGAAGCAGCCCGTTGATGACTTTAAATGTGCTGGTCATATAAAGAAGATCGAAGATACCTTTGCAAAGGACGTTAAAAAGGAGGCTGTTAAGGATCTTTCCTTAGTCGGAAGAAAGTTTAAACTTTCTCCGGGATACTTCAAAGAATTCAAGAATGTGGAAACTTTAAATCTTGCTAAAACGGGAATAAAGGAGGTATCAACAGAATATTTCAAGGGACTTAAGAAACTTTCATCTCTCTTTTTAGAAGATAACCTTTTGACGACACTTCCCAGAAACTTCATAGACGTATTGAAAAAGAACACTGGTTCTTTAACACTTGCTCTCCATGGAAACAAATGGGACTGCAGCTGCGCTAGTGGATTGCACAGAGCATTATCAGACCTCACAAATGTAAAATTTATCCAGAAAGCCTATTGCGAAACTCCTGAGCTCGCGCGGAATCAGCCCCTTGATAACTTTAAATGTGCTGATACCGATCAATGCATGGAAGAAAATGATTGTGATGACGAAGCAGTGTGCACAAACACTTTGCAAGGATATAACTGCCGTTGTGCAACAGCGGGATTTACAGGAAATGGCAAAGAATGCACAGACATCGACGAGTGTGAAGGCGAGAATTTCTGCGCCCCAGTTGGTGGAAAGTGTGTCAACGAACAAGGAAAATACCGCTGCGAATGCTTAAAAGGATACGAAGGAAACGGCAAAATTTGCAAGGACATTGATGAATGCAAGAATCATGACTGCGGGGGGGAGGGTGTGTGTACCAACACACAGGGAAGTTTCAAATGCGACTGTGATTTCGGTTATGAGAAAAATGAGCAATACGTTTGTGTTGATATCGACGAATGTTACTCGGGGAATCACACTTGTGACACCATGGAACACGGTTATTGTGTCAACGTAAAAAAATTTCTGCCCCAGGATCCTGGATATGAATGCGTTTGTGACTCAGGTTACAAGAAAGTCGGTTCAGCTTGTGTAAAAAGAGGAAGCACATTGGAGTTGGTGAAGTACATTGGTGTGATTGTTGGTGGTTTCCTTGGAGGTCTCCTACTCATTATTGTCGGCACTTTATGGTTACGAAAGCGGATGCAACTGAAGCTGGAAGCTGAACAGCTGTTAGAGAAGACATTGATGATGGCTCCAGTTGCTCCCATGCCTCCCCCGGTGGATTTTGTCAGTCTCAATGCCTCAAACAAGGAAAAAATCCAGGAATGGGAGGAGGATGATGAAGAGGGATAG

Transcript

asel_s0005.g2.t1

GTTCATGAAGAAGGAGTCATTCTGTTGATGAAATTGCCAAAAAAGCCACTTTAAGAGAAGCAACAAGACAATGTTTGATATCACGAATTGTTTGAATTCTTTCAACAGTGCTCTCCATGGAAACAAATGGGACTGCAGCTGCGCTAGTGGATTGCACAGAGCATTATCAGACCTCACAAATGTAAAATTTATCCAGAAAGCCTATTGCGAAACCCCTGAGCTCGCGCGGAATCAGCCCCTTGATACCTTTAAATGTGCTGATACCGATCAATGCATGGAAGAAAATGATTGTGATGACGAAGCAGTGTGCACAAACACTTTGCAAGGATACAACTGCCGTTGTGCAACAGTAGGATTTACAGGAAATGGCAAAGAATGCACAGACATCGACGAGTGTGTAGGCGAGAATTTCTGCGCCCCAGTTGGTGGAAAGTGTGTCAACGAACAAGGAAAATACCGCTGCGAATGCTTAAAAGGATACGAAGGAAACGGCAAAATTTGCAAGGACATTGATGAATGCAAGAATCATGACTGCGGGGGGGAGGGTGTGTGTACCAACACACAGGGAAGTTTCAAATGCGACTGTGATTTCGGTTATGAGAAAAATGAAAAATACGTCTGCGTTGATAAAAACAGAGATATTTTGTCAAGAGATCGGTTCATATTTCCTTCACAGGATCAAATGCGTTCCAGTGTCTTACGGGGAATGCACCTTAAACTTTCTCCGGGATACTTCAAAGAATTCAAGAAAGTGGAAACTTTGGATCTTGGCAAAACGGGAATAAAGGAGGTATCAACAGAATATTTCAAGGGACTTAAGAAACTTAAATCTCTTGCTCTCGATGGAAACAAATGGGACTGCAGCTGCGCTAGTGGGTTGCACAGAGCATTATCAGACCTCACAAATGTAAAATTTGTCCAGAAAGCCTATTGCGAAACCCCTGAGCTCGCGCGGAATCAGCCCCTTGATAACTTTAAATGTGCTGGTGAGTACGTATTTATCGAGAGCCCAGCACAGGCAGCGTGTAATTTCATGCACAGAGCATTATCAGACCTCACAAATGTAATACTTGTCCAAAAAGCCTATTGCCAAACTCCTTCCGTCGTGCAGAAGCAGCCCGTTGATGACTTTAAATGTGCTGGTCATATAAAGAAGATCGAAGATACCTTTGCAAAGGACGTTAAAAAGGAGGCTGTTAAGGATCTTTCCTTAGTCGGAAGAAAGTTTAAACTTTCTCCGGGATACTTCAAAGAATTCAAGAATGTGGAAACTTTAAATCTTGCTAAAACGGGAATAAAGGAGGTATCAACAGAATATTTCAAGGGACTTAAGAAACTTTCATCTCTCTTTTTAGAAGATAACCTTTTGACGACACTTCCCAGAAACTTCATAGACGTATTGAAAAAGAACACTGGTTCTTTAACACTTGCTCTCCATGGAAACAAATGGGACTGCAGCTGCGCTAGTGGATTGCACAGAGCATTATCAGACCTCACAAATGTAAAATTTATCCAGAAAGCCTATTGCGAAACTCCTGAGCTCGCGCGGAATCAGCCCCTTGATAACTTTAAATGTGCTGATACCGATCAATGCATGGAAGAAAATGATTGTGATGACGAAGCAGTGTGCACAAACACTTTGCAAGGATATAACTGCCGTTGTGCAACAGCGGGATTTACAGGAAATGGCAAAGAATGCACAGACATCGACGAGTGTGAAGGCGAGAATTTCTGCGCCCCAGTTGGTGGAAAGTGTGTCAACGAACAAGGAAAATACCGCTGCGAATGCTTAAAAGGATACGAAGGAAACGGCAAAATTTGCAAGGACATTGATGAATGCAAGAATCATGACTGCGGGGGGGAGGGTGTGTGTACCAACACACAGGGAAGTTTCAAATGCGACTGTGATTTCGGTTATGAGAAAAATGAGCAATACGTTTGTGTTGATATCGACGAATGTTACTCGGGGAATCACACTTGTGACACCATGGAACACGGTTATTGTGTCAACGTAAAAAAATTTCTGCCCCAGGATCCTGGATATGAATGCGTTTGTGACTCAGGTTACAAGAAAGTCGGTTCAGCTTGTGTAAAAAGAGGAAGCACATTGGAGTTGGTGAAGTACATTGGTGTGATTGTTGGTGGTTTCCTTGGAGGTCTCCTACTCATTATTGTCGGCACTTTATGGTTACGAAAGCGGATGCAACTGAAGCTGGAAGCTGAACAGCTGTTAGAGAAGACATTGATGATGGCTCCAGTTGCTCCCATGCCTCCCCCGGTGGATTTTGTCAGTCTCAATGCCTCAAACAAGGAAAAAATCCAGGAATGGGAGGAGGATGATGAAGAGGGATAGATGCTATCCAGGGGCTTGTTCTCATGATATGTTTTGTGAACCATCAATAAAAGAATTGGACCAAAGTCTTTAGTCTTGTCTCTCGGAGAGATCGGAGGCGTGGTTAACAGTATCCGTCTTGTGTCTGAGCAAGTTGAAACATTTCATTTTGTTCTCTGAATCCACCAATGAAAGCATTGCGGAAAGAATAACGCATTTAGAATCTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005433 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039 all species →	FIBRILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0005.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.