Gene detail

Detailed information of asel_s0016.g83.t1 in Acropora selago

Genomic Location: sc0000016_pilon:1145955...1159663
NR annotation: XP_044175851.1, AP-3 complex subunit mu-1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

asel_s0016.g83.t1

GTTTAGTTGTTCACGAAGAAAGTGCTGTGCTTTACGTTAGACGCCATTTTGGACTTTTAGAGCTGTACGTTGGCAAGTAATTAGAGGTTCAAGCATGATAAATAGCCTGTTTGTGATTAATAATGTTGGAGACGTTTTCGTCGAAAAACACTGGAAAAGTGTCATAAGTCGGTCTGTGTGTGATCATTTCTTTGAGGCCTTATCAAAGGCAAATTCACCAGAGGATGTTCCGCCTGTAATTGCTGCTCCGCACCATTATCTAATAAGTATCTACAGGAACAGCTTGTTTTTTCTTGCGGTTGTGCAGACAGAAGTACCACCGCTGTTTGTCATCGAGTTCTTACACAGAGTGGTGGATACGTTTACGGAATACTTCAACAGCTGTACTGAGGCATCTATCAAAGAACACGTTGTTATTGTATTTGAGTTACTTGAAGAAATGCTGGATAATGGATTTCCTTTAGCAACAGAGCCCAACATCTTGAGGGAACTTATAAACCCTCCAAGCATCGTCAGACAAGTGGTCAACACAGTCACTGGTGGATCACACGTGAGCTCTCATTTGCCCACTGGTCAATTATCTAATGTGCCATGGAGACGAACAGGAGTAAAATATACGCATAATGAGGTGTATTTTGATGTTGTAGAGGAAATTGACTGCATTATTGACAAACATGGCTCAACAGTATTTACAGAAATCCAGGGAGTGATTGACTCATGTTGTAAACTATCAGGAATGCCAGATCTGTCTCTCTGTTTTGTGAATTCAAGACTGCTTGAGGATCCAAGTTTTCACCCTTGTGTGAGATTAAAAAGATGGGAAAGTGAAAAAGTCTTATCCTTTGTGCCACCAGATGGAAATTACAGACTGTTGTCTTACCACATCACTACTGGAACTGTTGCAATTCCAGTGTATGCAAAACCTCAAGTAGCTTACAATGAGGGAGGCTCTGGAAGGTTCGACCTCACTGTTGGGCCAAAACAAACGATGGGAAAATTAGTGGAAGACGTTGTTGTCACTGTTCCATTCCCAAAGCAAGTGTTAAATGTGAACCTGACTCCTTCAGTTGGTTCCTGTTCATTTGATCCTGTAAAAAAAGAACTTGTGTGGGATATAGGTAAAATACTACCCCAGAAGCTGCCCAATCTGAGAGGAAGTATGTCGCTTCAAACTGGTGTCCCGCCTCCAGATGAATCTTGCACGATATCCATTCAATTTAAGATCTCACAACTTGCCGCCTCAGGCCTGAAAGTCAGCAGATTGGATATTTACGGAGAGAAATACAAGCCTTTCAAAGGAGTCAAATATGTCACCAAAGCGGGGAAATTCCAGATCAGATTGTAGAACTATATTTTAACAATTTTTCAAACAAAATTACGAATATTAATTAGTACCTCAGAAGAGTTGAGGTCGAAGAAATATTTTGATTATTCATTACCAAAAGAAGAAATAGTGCGTCATTATTTCGCAAGAAATAATAAAGGATCTCAAAGAGTAGTTATTTGTAAGTGAACCTGCGAATACCTTACCAAGTGTTTCGCGTTGTGTCCCAAAGCAATTGGTTAGTTTATTTAGGGCGTGGCGTGTTGTGGACGATTCTTGTCGAACCTATAACGCTGGCATATCTTAAAAATACAaattttttttaatgcaaattcCTACGCGACTAGCGCGGTTTGTTTTGGCCATCTGGGAACGTGAGAGCTGAGGATTGAGAGATTTAGCGTGAAACGTGAATTGTGAACGGCAAGAGTGACCACATGACTAAGATTTTACTACCGATTTTGACCTTTGCCGTTTCAACGTAACAGCAAGCTCTTTCGCGTTTGACGTGTACGGGAGTTTTTCCTTCCTTTTTATTCACAGATTACTAGTCCATTGCCTCAAACAAATGCATCAGAAGTATTCCTTAGAAGTCATTCGAGGGCAAATGAAGTTTCACGTTTTAAATCTGTTAAATACCCCTCTTTCTTCAGCATACAGCCGTTTGAACTCACGTTGACTCAGAAAACAATTTCATCGAAAATCACAAAAGTACACAGGATAAAAACCCCATTGCTTTCATTGGTATTGTGTCTCCATTGTCCCTCAAGTAACAGAAAGAACTACAGCATTGCATCGCCGTCACGTTTGCTAGtagagagctttagattcaaagacgagaacgaggaccaagtccaacttttgctcattgtgcgcatgctcaaatccgtgacagtgatggcgtgacaatgttgttgc

Protein

Uniprot

Uniprot term	Description
Q9Y2T2	AP-3 complex subunit mu-1 OS=Homo sapiens OX=9606 GN=AP3M1 PE=1 SV=1
Q5R478	AP-3 complex subunit mu-1 OS=Pongo abelii OX=9601 GN=AP3M1 PE=2 SV=1
Q5ZMP7	AP-3 complex subunit mu-1 OS=Gallus gallus OX=9031 GN=AP3M1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036168	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR028565	Domain	Mu homology domain	Interproscan
IPR050431	Family	Adaptor complexes medium subunit	Interproscan
IPR018240	Conserved_site	Clathrin adaptor, mu subunit, conserved site	Interproscan
IPR001392	Family	Clathrin adaptor, mu subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0030131	Cellular Component	clathrin adaptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12398	AP3M; AP-3 complex subunit mu	-	Membrane trafficking	ko04131	deepkoala