Gene detail

Detailed information of asel_s0016.g86.t1 in Acropora selago

Genomic Location: sc0000016_pilon:1171470...1182523
NR annotation: XP_044175860.1, aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like isoform X2 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12904	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens OX=9606 GN=AIMP1 PE=1 SV=2
P31230	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus OX=10090 GN=Aimp1 PE=1 SV=2
O54873	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus OX=10029 GN=AIMP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01588 all species →	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002547 all species →	Domain	tRNA-binding domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR051270 all species →	Family	Tyrosine-tRNA ligase and regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11586 all species →	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0016.g86.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0016.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

24TPM > 0

1Conditions

399.3Max TPM

313.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	24	313.07	399.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	399.34
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	398.73
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	351.30
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	349.55
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	347.58
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	345.34
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	335.31
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	324.54
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	322.83
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	313.10
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	311.01
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	307.12
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	305.77
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	304.51
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	302.45
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	302.40
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	294.76
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	283.21
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	282.86
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	282.00
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	278.28
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	274.56
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	251.08
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	246.18

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.