Gene detail

Detailed information of asel_s0018.g61.t2 in Acropora selago

Genomic Location: sc0000018_pilon:867910...883230
NR annotation: XP_029206384.2, rhotekin-like isoform X1 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0018.g61.t2

CGCGGGCGCCCATTGGTAATTTATTCACAGAAGATGGCCACCCTACAGATTTGTAATGAATTACGCAAGACGAGGCAGTATCGAAAGGCCAGCACCGAGTGGAGCCGAAACGATGAGTCCGAAGTCGGAGTGCCGGTGAGAAAGAGGAGGAGGATGGAGCCTGAATGTGTGGAGAAATGGGACGCTGCTGCTCTGAAGATCAGGCCGGTGGATTGTCGCTGGTTCACTAGATTTTTTTACTTGCTTAACATGGACGAACTGTTGGTACATTTAGACAGCAGAGGAGTGAAAAGGCCTTTTGAGGAGGAGCTGGATGATTCAGCAATTCAGGAGAAGATTGATCATGAGGTTCACATAAGAGATGGTATTATGAAGTTATTAGCAGCTTGCCATGAGGAAGTACAAGCCCTTGAAACATCCAAGAATCTTCTAACAATCAATGCACGTATTCTGGCGTTAATGGGTCTTCTACAGAGGCACAGAGCAAAGTCAGTCATGAGGCGGAAAGGGTCCAGTTCAACAGCATTCTCTGTGGATTCAGATGATGATGATGATGCTCCTTGTAGAGCTCAACTTTCTCTGTCAGACATCCGTGTCCCTTTGATGTGGAGCCAAGAAGATCACAATAAAACCAAAACAGAGCAACATCTTTACTATGTGTTTTGCCTATTGAAGCTGGATGGACAAGTTTTAGACACTGCTCTTGTGGAGACAGATGAATCAGAGACAGATGTTTCCTTTGACAATGTCATTGTCTTTGATAACGTGAGTCATGATTTCAAGTTGGATATAGAGATTTACTACTCTGTTTCAGCTGAAAGTGCAGCAAATAGATTTTCAGGTGTAAAGAGGCCTCTTAGAAGAACTGGGTCAGGCCCAGAATTAACCAAGTTTATTCTAGCTGGGCACACCCAGCTTACTGTGGACCATCTAAATGAGAGTGTCAAGTCACATGATCTCAAAACAGGTGTAGTTGGCGCCAGTCCCCTTGCAACCACAACGGAGGGCTCTAACATGCCCCAGTTAGCCCTTTGGGGTCAGATTTGCTGTCGTCTTGCCGCCAGACCTGAATGTGTGGAGGCAGCTCAAATGAGTGGCTTTCTTGATTTGCAGAGGAGGACTGGCAGCCAGTTTTCATGGTGTCAGCTATGGTGTGTCTTAAGACATTCAACTATAAAATGCTGGAACAGAAAAGAAGACTGCAATAATGCAGAACCAGTCGAGTTGATAGACATCAAACCAAATATGGAAATAGCAGATACAGTTAGTCCCACCTTCCAGAAGCGCCATATCCTTATACTTACAAGTTTAACTCCTGAAAAGGAGCCTGTGTTAGCATCTAATTGCGAGAAAGAATATGCATGCTGGAGAGATGCCCTGCGTCAGGCCATAAGGGATGTGGCAGCATGGAAAACAGCTTGTAAGCAAGAGATGAATATTGTTTATCCATCACCAAAGAAGATTCCCTCAGTTGAGACCAAGACTCTCTATGAATCAGTAGAGGTTACTCTGTCTTGCAATGTACACGATTATTTGAAGCGTGATGCCAAGCGTGTTCCTCTGGAAGAACTGAAATCCATTCCTGCAGATTCCGCAGCGAGTCTAGAGTGCACGTATGATATCTGGCAGAGAAGAGTCCCGCAAAATAGAAGCTTTAGGAAAGGCGGAAAGAAGAACGCTACAACAGATGAAAATGCGTTGAACTATGAAAGCACAATCTAAGCTGTGTTTTCAGACTAAGAATTCGTCATATTAACACTCCACTACTGTGGTTGCCATGATAAATTCTTGGTGAAGTTACTACACGTAAGCATGATCAGAGAAGGTAGCTTTCAGGAAAGCGTTTGCTTCTTTTAAAAGGCTGCTTGTAAATATGAAATACCCGCATTTAGTATTTATAACACTCGACGAGCTAAATGAGCTCTACAGAAATGTGATTGAGATTTTTCTGGAAGATTGATATGTAAATGAAACTAGGAAAAAAAAGGAAAGTATGAATCTTGCCGGAATAACAACCTTGAATTAGTTCCATCCTAAAGCCAAATTTATCATACTTGATGAGCTTACCGATTAAAAATTTGTACAGATAAGAAAAAGAAAACAGCATCATTGCGTCAGTTATAAATTCAGGTTGAAAGTAATAAAGAAACTTTATTTATTAACGTGGTGGTATCCAAGTCTTCGTGTTTAGGGGGCCGCGAGCAATTTTTGTGACAATTTTACCAAGCACATTTGATCACATGGATGGCACAAaagtgatggtgacgtttacgagaaggcgacaggacactttgtggggtttattgaaagtagcatgcatccagttacgtgcgtttccggacataTTAGAActtaagcggtcgacgcttttgagacgcagacggaaagctgaagggagtatttggcatgccaggacggtggtctcccagatttttaaactaatagtctctgctagtgaaaagagacttaacaatgtaaatgtggttgtgtgaaggtaagttaaacaggaaaacagcccactttcggttgccgtacgtgcctcacgaacaccgcctgctaaagctccctACTAGACTACACGACCAATTGTTTGTCAGCGACAATTTTCATTTGTCACATACAAAGGCTAACGCGTCAGCGTTTCGGCGAAGTACTTGTCACAAAAACGTTGGTCAACCCTATAACACGAGCAAATAGAATCTGTCCTAAAAATTCCTCGCGAACGCGATGCCTTAGAACGAATTGCAAAGAAACAATGGATTTGGGATTTGAACCTAGGACATGTAAATTGTTACTTGATAAACGTGCTTTGGTGGAATTTTCATTTTGGATTGTGTCCCTTCCTTTCGGTCCGCGGTTTTCATAGTTACTTGTTCTGTCTGTAAACCTTCACCTGACCCTTCGCCATCCACTGGCCTAAGGGAAAAGAAGAAAATGAGCACAAAACAAGCTTTTGTCCAGGTTACAACCATCAACACAACGAGAATATCTTGATATTGGGTCGAGAGCGAGCAAGCCGACAGTTGTCTGAACGACATACTGTAGCCGAAGATGTATAAATTCAGCTTTCGACGTAATGGCAGACGGTATAATAAAAAGGTTTAAACTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BST9	Rhotekin OS=Homo sapiens OX=9606 GN=RTKN PE=1 SV=2
Q8C6B2	Rhotekin OS=Mus musculus OX=10090 GN=Rtkn PE=1 SV=3
Q8IZC4	Rhotekin-2 OS=Homo sapiens OX=9606 GN=RTKN2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002922 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08174 all species →	Anillin	Cell division protein anillin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051364 all species →	Family	Cytokinesis and Rho signaling-related protein	Interproscan
IPR012966 all species →	Domain	Anillin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21538 all species →	ANILLIN/RHOTEKIN RTKN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0000915 all species →	Biological Process	actomyosin contractile ring assembly	Interproscan
GO:0005826 all species →	Cellular Component	actomyosin contractile ring	Interproscan
GO:0031106 all species →	Biological Process	septin ring organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24024	RTKN; rhotekin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.