Gene detail

Detailed information of asel_s0018.g90.t1 in Acropora selago

Genomic Location: sc0000018_pilon:1456799...1485609
NR annotation: XP_015758441.1, PREDICTED: uncharacterized protein LOC107337727 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s0018.g90.t1

atgccaccgcacctcagtttcaaactgaaaaaaactagtgatgttgtaacatccactataaaatggagatgtgatcatcggccaattgatattttactattgactgtggaaagttgtgctttcttgagctgttactccctgctgcaccaacctttcaaaagttacaaagaggagcttggttatgtgtactttggacgcatgggagaggccattgatgaagaaaaactaagggttgcattgatgacctcttcagaaggaggctgtttggcagtgggtcacattgcatttagagttcttcggccgaaggttgtattttcagtgggaacttgcattagtttagactctgagagggtcagaaggggagatgtagtcatatcttcgaagcttacaactgcagacggattcaaagttcctgtcagcccacttctaggcagtcttgttaaagatgcaccctatgggtgggctcccccgttggaaaatccaggtcaatcagaaattaatatacatcccaatggtgatatcctgagcctCtcactgacattgaagcgtcattatgatgatatttttaaggaatatcctggggcagttgcaatcgaaacggaaggcaaaggtgtttatgctgcagcccatgctgcaaacattgagtgggtgttagtgaagggtgtggccagttatttttatcaaaaccagtctgcaacgtctgaatggatgtcttttgcgagtagcatggctgcctctgtggtggccaagatgctaattggaaacaaaccgagaacaattttgttactgggtgactatcgaacatctattaagtaccttgagaaaagtttgaaaattgcaatggaaatcagtgatcggcatggagaaggaaaagcctatgaaaatcttggtgttacttatcggtcactaggcgactatcgaagagccattgagtaccatgagaaatacttgaaaattgcaatagaaatcggtgatcggggtgaagaaggagtagcctatggaaatctcggtaatgcttaccagtcattagaaatcggtgatcggggtcaagaaggagtagcctctggaaatctcggtaatgcttaccagtcactgggtgactataagaaagcgattgagtatcacgaaaaatatttgaaaattgcaatagaaattggtgatcggggtggagaaagaagagcgtatggaaatcttggtgttgctagcaagccactgggtgactatcgaaaagccattgagtaccatgagactagtttgaaaattgcaatagaaatcggtgatcggaatggagaaggagtagcctatggaaatctcggtgttgcttacaagtcactgggtgactaccgcaaatccattgagtaccttgagaaacggttgaaaattgcaatggaaatcggtgatcggatcggagaaagaagagcctatggaaatctcggtgttgcttacaagtcactgggtgactaccgaaaatccattgaataccttgagaaacgtttaaaaattgcaatggaaatcagtgatcggcgtggagaaggaagagcctatggaaatctcggtaatgcttacgggacactaggaaactatcgaaaaggcactgagtactttgacaaacaattgaaaattgcaatagaaatcggtgatcggggtcaagaaggagtagcctatggaaatcttggtaatgcttaccagtcactgggcgaatatcgaaaagccgttgagtactatgagaaatatttcaaaattgcaatagaaaccggtaatcggggtggagaaggagtagcctatggaaatctcggtaatgcttaccagtcActGggtgacCataagaaAgcgattgagtatcacgaaaaacatttgaaaattgcaatagaattcggtgatcggggtggagaaggaagagcGtatggaaatctcggcgttgcttacaagtcactgggtgactatcgaaaatccattcagtacctggagaaacatttgaaacaAtag

Transcript

asel_s0018.g90.t1

agctaagaagagacctctacagctcctgttcaagctgtagcagcaggtaattgaagaagaacctagctcaatcctagaaacattttgccactctgatcagacaacaatgcagcaacatattttggatgatatatgtgccaccttgtgcagtgaaaatgaagacagcatgccaccgcacctcagtttcaaactgaaaaaaactagtgatgttgtaacatccactataaaatggagatgtgatcatcggccaattgatattttactattgactgtggaaagttgtgctttcttgagctgttactccctgctgcaccaacctttcaaaagttacaaagaggagcttggttatgtgtactttggacgcatgggagaggccattgatgaagaaaaactaagggttgcattgatgacctcttcagaaggaggctgtttggcagtgggtcacattgcatttagagttcttcggccgaaggttgtattttcagtgggaacttgcattagtttagactctgagagggtcagaaggggagatgtagtcatatcttcgaagcttacaactgcagacggattcaaagttcctgtcagcccacttctaggcagtcttgttaaagatgcaccctatgggtgggctcccccgttggaaaatccaggtcaatcagaaattaatatacatcccaatggtgatatcctgagcctCtcactgacattgaagcgtcattatgatgatatttttaaggaatatcctggggcagttgcaatcgaaacggaaggcaaaggtgtttatgctgcagcccatgctgcaaacattgagtgggtgttagtgaagggtgtggccagttatttttatcaaaaccagtctgcaacgtctgaatggatgtcttttgcgagtagcatggctgcctctgtggtggccaagatgctaattggaaacaaaccgagaacaattttgttactgggtgactatcgaacatctattaagtaccttgagaaaagtttgaaaattgcaatggaaatcagtgatcggcatggagaaggaaaagcctatgaaaatcttggtgttacttatcggtcactaggcgactatcgaagagccattgagtaccatgagaaatacttgaaaattgcaatagaaatcggtgatcggggtgaagaaggagtagcctatggaaatctcggtaatgcttaccagtcattagaaatcggtgatcggggtcaagaaggagtagcctctggaaatctcggtaatgcttaccagtcactgggtgactataagaaagcgattgagtatcacgaaaaatatttgaaaattgcaatagaaattggtgatcggggtggagaaagaagagcgtatggaaatcttggtgttgctagcaagccactgggtgactatcgaaaagccattgagtaccatgagactagtttgaaaattgcaatagaaatcggtgatcggaatggagaaggagtagcctatggaaatctcggtgttgcttacaagtcactgggtgactaccgcaaatccattgagtaccttgagaaacggttgaaaattgcaatggaaatcggtgatcggatcggagaaagaagagcctatggaaatctcggtgttgcttacaagtcactgggtgactaccgaaaatccattgaataccttgagaaacgtttaaaaattgcaatggaaatcagtgatcggcgtggagaaggaagagcctatggaaatctcggtaatgcttacgggacactaggaaactatcgaaaaggcactgagtactttgacaaacaattgaaaattgcaatagaaatcggtgatcggggtcaagaaggagtagcctatggaaatcttggtaatgcttaccagtcactgggcgaatatcgaaaagccgttgagtactatgagaaatatttcaaaattgcaatagaaaccggtaatcggggtggagaaggagtagcctatggaaatctcggtaatgcttaccagtcActGggtgacCataagaaAgcgattgagtatcacgaaaaacatttgaaaattgcaatagaattcggtgatcggggtggagaaggaagagcGtatggaaatctcggcgttgcttacaagtcactgggtgactatcgaaaatccattcagtacctggagaaacatttgaaacaAtagaaatcggtgatcggggtggagaaggaaaAacctatgaaaatcttggtgttgcttacacattactgggtgattgtcaaaaagccattgattatcatgaaaacgattgaagattgcaatagaaatcggtgattgagccggagaaggaaTttgcttattgcaacatttgaacttggtactttcctcttaaacaattctaaagccagatggataatggttttccgctgtggaagcttttaatgctgtgagatcttgcttgaagtctagagatgattggaaaataagctttcgtgatcagcaagaagGAGATTTGACTTTTATTGATATGCAAGGTAAGCATTCGCGACCACCACGCTGAAGAATTTTGTTTTTGTGTGACAAAATATACCAGTAAAATAACCTCTTCGTGCAACGATTTCAGAAAATTTGTACAGCGCTACTAAAAGTCAAGGTCAAGAGGAGGATGAAGAACTGTTTTCTGTAGGTTTCCAGCTCAGGGACATCCACAGCAAAAAACTGGGGGGTTTGTAAGCCATACAAGCAAGTGTGGCAGTTCACTAACAAAGCCGCTACTATGTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13176	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR035994	Homologous_superfamily	Nucleoside phosphorylase superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0009116	Biological Process	nucleoside metabolic process	Interproscan