Gene detail

Detailed information of asel_s0019.g86.t1 in Acropora selago

Genomic Location: sc0000019_pilon:1539699...1544042
NR annotation: XP_029200008.2, stabilizer of axonemal microtubules 1-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0019.g86.t1

TGTCATGGACGATAAATGGTCACAACACAACGATTCATGTTGAACATGGTTTCTCTCAGCGTGAGAGGATTTCGTTCAGTAGTATCGATGAAGGCGCTTTTGTAGTATTTTGGTTTGCAAGAGGCAAGGAAAGATAAAATGGCCTTATCAAGGCAATATACAGCGGAGACAGACAGTCTTTTGAAGGAGAAAGGACTCAAATGTGTTTGCGAACTGTGCGATTGTGGTGGATACCATCGCCACCAGGGCTGCATGAAAAATTCCCACAAAGTGAAAGCTGTGTTTCAGCGGCCGGGTATGTCTGACGTCAAGACGGATTACCAACAAACCTACACACTCCACGAGGATACCATGCCACGCAACCCAAGGAAACCCCTGCCCCGCTTGAGGAACCCTAATCCACCGCCTATGGACTTCCGGACGGTACAAAGAATGGATTTCATTGAACGAAAACCTGAACCACTGCAATTTCACAAGGCCACCGAAGAATACAAAACACCCGAAGAGAAGATCGACGGGAAGACAGTATATGCCCAAGATTTCGTGGACCGAGGGCCTACCGAAGTAGTGAAAATTACCCGACCGCAAACGATTGTTCAAAACGGGAACCTGAAATTTCAGTCGGCAACCACTCACAAGCAGACATTCACCCCGAAAATTCCCAGTCCCCAGGTGCCATTTGCTGAGCGTCCATGCTTTACAGGTTCAATACTGTACCCCGATAAAGCGAGTAAATACGACGTAAAAACGTGGAATCAAGATGTGTACCGGGGGAAATTTGCCGCGCGGCCTGAAGCTTTCAAACCCAAAGAGGCTCAAATCACTATCGGTACAGAGGGAGATCATCTTTTAACGACAGTTCACAAAGCTGAATTCACGAAACCAGAGCAAGGAGGAAGACGGGAAGTCAAGGTTCAGAAGCCAACACTGAAAACTGAAAAACGCTCAAAATTCCGTGGTGATACCCAAGCCAAGAGCGACTTTCCAGGTTTTGGCACTAAAATGCCATTGCCTCCGAAACCTTGCTCACCAGCTCCAGCAACACTCCGACTGGCCATGAACAATTCGCAGGACTTCGAAACAACCAACAAGGAATTCTATAAAATTTCCTGGGATCCTAGCAAGATGGAGCGCACGAAAATTTTAAAACCGGAAAGTGGCGAATATGTGCAACCGGAAGTCAAATTTGCTTCTACCACCATCACGAAGGAAGATTTCAAAAAGAGGGAAACTGCGCGGATGCCGAAGATAAGACCTCCATCAAGAATTGAGCCAAGCAAAGCAAAATTCTTCAGTGAAACGGCTTACAGTGCACAATTCAAGCCTTATAAGAAAGTTCCTTTTGTTCGCTATGGTGATTTTCACGAGACCAATTTTTATCAGAAGCCGGTTGTAAAATTCTACCAAGATGGCTCTGTAACAGCACAGGACTTTAAAGGCGCCGAAGGTGGAAGACCTCGAACGACAATGAAACCGGAAGAGAAACTCGAGAAAATCAACGAGAAGATGACGGGCCACACTTCATACAGCGAGGCCTACAGTCGAAAAAAGCTCCCACAATGCTCTTACCTAGAGTGGAGATCTAAGCATTTAGCTAAGAAGGCATTAGCTACTGTTTGACCTAAATGCCTTTGGTGTTAAGGTGAACACTGAAGTGATAAGAAACAGACAATTAGAAGAACGATGTATTGAaaaacaaaataaagcaaaaaaacaaacaagcaaaaacaaaaaataaaataaaaacaaaacaaaataaaaattaacaaaGAATCATGCCACGAAGAATGAAGAGAAAACATTTTATTATCACTTCCGAAAAGGAAAAAAAGACCGGAATAAAAAGGGTCTAGTTAACTTTTCTTAGCAAAGAGAAAACGTTTAAAGAAACAGGAACAAAATGTAGGGTTTTATTGGTCACGTTCCGTTCGTATAGGACTCTTTGGGTTTCAATTTCAAAGTCAATTAGCTCTTCAAAGCCAGTCATTTTTCTCAGATTCCAAGACTCATGTGAGCTTCCTGATTGGCAACATTTGTCCCGCACGGGGCAAAATTCACGTGCACTCTTGTTCATATACCCACACCCAGGTTTTGTTGAAGTAGAGAATTTTAGTTTTGATATGTTTCGGATTAGTTTTATTCTATCCACTATTGTTGCAAAGCTAAAATAAGTGTTTTTTTATGTTTCCATTTTTGAATTACATTGTAGTTCACTACTGCGTTTTATATTTGCGCTGTGGCAACAAAATCGCATTTCATACATTCAATAAATTATTATTTCACTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008695 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for asel_s0019.g86.t1 in Acropora selago.

InterPro

InterPro term	Type	Description	Source
IPR033336 all species →	Family	Stabilizer of axonemal microtubules 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31516 all species →	STABILIZER OF AXONEMAL MICROTUBULES 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0019.g86.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0019.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

23TPM > 0

1Conditions

79.1Max TPM

39.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	23	39.86	79.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	79.05
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	54.71
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	54.42
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	54.08
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	51.93
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	47.05
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	46.65
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	46.21
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	43.04
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	42.82
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	41.80
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	38.88
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	38.57
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	37.50
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	35.86
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	35.80
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	34.72
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	33.46
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	33.03
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	32.53
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	25.45
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	24.94
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	24.18
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.