Gene detail

Detailed information of asel_s0020.g3.t2 in Acropora selago

Genomic Location: sc0000020_pilon:100253...141015
NR annotation: XP_029202966.2, nitric oxide synthase, brain-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0020.g3.t2

ATGTGTTCAAAAGTCCAATCGGAATACCCCTCAAGTGGTTCTTTTAGAGAATTCCAGATTAGACCACAGGAACCCAAATATCTCAGATTAAAGAACTATGTGGAAGGTTCCGAGGTAGTTGATACTCTCCATCAAAAGACGAAAATACCTCTTCATTGTACCAATGGGCGCTGCACTGGCTCCATTATGATCCCGCGTGGAGGCGAAACACCCCAACCACGGTCCTACGGAACAGCAAGGGATAAAGAGGAGGTGACAATACACGCTGAAGACTTTCTGAAGCAATACTTTGCTTCTATTGCCAGGTCCAGCAGCGATGAGTATCACGAAAGACTGGCCGAGGTGATGATGTACATTGAAGGAAACGGATCATACAGCTTATTGGAAAAGGAGCTTGTCTTTGCTGCCAAAACAGCGTGGAGAAACGCTTCAAGATGCATTGGAAGAATACAGTGGAACAACTTAAAGGTGTTTGACGCTCGCGATGCAAGAACTGCGAAAGAGATGTTTGATGCGCTGATGAGGCATTTGGAGTTCTCTCTTAACAAGGGCAACTTAAGATCAGCAGCCACCATTTTTCCTCAAAGGAGTGAAGCAAATAAGGATTTCCGTATATGGAATTCCCAACTGCTCGGCTTTGCTGGCTATCGGCAACCCAACGGTTCTGTGATCGGTGATCCAGCTAACGTGGAATTTACCGAGATGTGTCAGTCGCTGGGTTGGAAAGGAAATGGCGGTAGATTTGATATCCTGCCCCTGGTGTTACAAGCCCTTGGAGGAAGGCCCGAGTTCTTTGACATACCCAATGATCATGTTTTTCGGGTGAAACTAAAACATCCCAAATACCCTTGGTTTGAGAAACTGGGTTTAGAGTGGTACGCTATTCCTGCTGTGTCCAACATGATGCTGGATGCTGGAGGTCTGGAATTCACAGGCACAGCATTCAGTGGTTGGTATATGGTGACAGAAATTGGAGCAAGAGATTTAGCAGATGAGCAACGCTACAACATGTTGGAGGTTGTTGCCAAGAAAATGGGCTTGGATACCACAAGTAACGCGTCCTTGTGGAAAGATTTTGCATTGGTGGAACTCAATTATGCTGTTATGTCCAGTTTCACGGAGGCTGGAATCACACTTGCTGACCATCACACTACATCAGAGGCCTTCATACAACACATGAAAAAAGAGGTGAAGCTGCGAGGTGGCTGTCCAGCGGATTGGGTGTGGATTGTTCCTCCAATGTCAGGCAGTGCAACAGGGGTGTTCCATCAGGAAATGCTGAATTATGTTTTGAAACCAAGTTATGAATATCAGCCCAATCCTTGGACAGTTAACAGCGTTCATGGAGAGACCAAGAAGAAAATGTCCTTTAAATCAGTGGCCAGAGCTATTCGTTTTGTTGCTTTCTTGATGAGAAATGTTTTGTCGAAACGGACAAAAGCCACAATCTTGTTCGCAACAGAAACAGGGAGGTCAGAGAGATTCGCTTGGAATTTAGCCAAGGTGCTGTCGCACATCTTTGATGTTAAGGTTTTATGCATGGATGAATACGAGCACAGGCAGCTTGTTCATGAGAAACTGCTGTTTGTTGTTACAAGCACATTTGGCAACGGAGAATCCCCAGAAAATGGAGCGAGCTTTGCTGCCTTCTTAAAAGGCTTGAAGAATGAGACTACAAGACCTTTGAAAAACCTGAGATATTCAGTTTTTGGACTGGGATCCAGGGCTTATCCTGATTTTTGCGCCTTTGGACACTACGTGGATGATCACTTGAGGCAGCTTGGGGCCCAGACAATTCTAACCATGGGGGAGGGGGATGATTTGGCCGGCCAGGAGGAGTCATTTAAGGAGTGGACAAAGGATGTGTTTAAGATGGCGTCTAATAGCTTTGGAGTTAACACTGAAGCTGCAAGCAAAGTGGTCAGTGACTCGTTAAAAGAGATGGTCTCAGGCTGGAGTCCAGGCCTTTACCGTTGGGTGAGCGACAATACAATACCAATGGACCTTTGTACAAATCTTTCCAAGGCTTACAACAAGACTGTATGCTCAGCAAAAGTTATTTCAGTGACTGAACTTCAGACAAAGCGTTCAAGGCGCTCGACTGTTCTGGTTAAGCTAGACACAGGAAACGCAACACAGCAACTGGCCTTTCAACCAGGAGATCACGTGGCCATTTTTCCCGCTAACAAGGCAAGTTTGGTGCAGGAGCTGATCGACCTTATGCACGTAAAACCTGATCCGAACCAGCCAATCAGGATTGAGGTCGCCCACGAAGACTCAGGCAAACAAAGTGGAACAATGACGTGGAAGCCATTCAATCGACTTCCCGCTGGCTGCACATTGACAGAGGCACTGACGAGATACCTCGATATCACAGCTGTTCCAACACCGCAGATGCTCAAGTATTTAGCAAAGCTGGCAACAAGCACACTGGAAAAGATGCAGCTTGAGGCCCTTGGAAAGGGTTACTCTTGTTACGAGGAATGGGCCCTACAAAAGGAATGCAACATCTTCGAGACACTGCGAGAGTTTCCGTCTGTTAAGGCTACCGCAGACCTACTTCTCACACAACTTCCGGCTCTGCAACCGAGATTCTACTCAATTTCCTCTTCCCCTGACGTGTACCCCAAAGAAATTCATGTAACAGCGATGGTATTTGAATACAAAAAGAGAGGTGGTAAAGGTCCAATGCACGAGGGTGTCTGCTCCAAATGGCTTCAGTCATTGAAATCTGGCCAAGCTGTTCCTTGTTACATCAGACAAGCCCAGGCCTTTCATCTTCCATCCGATGGCTCCGCACCATTGATCCTTGTAGGGACTGGAACAGGTATCGCTCCTCTGCGCTCCTTCTGGCAACAAAGGGCTATTATTGCCGATCATCAAAATTTCTCACCTGAAGAAGCTCTGGAGTTTATCCGCAAAATGAAGTCATCAAGCCAATACCACGAAGACATCTTTGAAGTCCCTCGAAAGATCAAGGAACCAAAGGAACGTGGGTGA

Transcript

asel_s0020.g3.t2

ATAATGAATTCTTAGGACAAAAGATTTCAGGGTAGTGATAAAAAGACCTATTCAGTTCTGGGAAGTGCAGCTGAGCATGTCGTCAAGTTAAATAAGCTGATGATCAAAGTGGATTACAGTCACTGTCTCTGCATGAGCGTGGGAACGCCTCACAAGATTATAGAGCCAAGAAGGAAGAGTCATCAGGATGTGTTCAAAAGTCCAATCGGAATACCCCTCAAGTGGTTCTTTTAGAGAATTCCAGATTAGACCACAGGAACCCAAATATCTCAGATTAAAGAACTATGTGGAAGGTTCCGAGGTAGTTGATACTCTCCATCAAAAGACGAAAATACCTCTTCATTGTACCAATGGGCGCTGCACTGGCTCCATTATGATCCCGCGTGGAGGCGAAACACCCCAACCACGGTCCTACGGAACAGCAAGGGATAAAGAGGAGGTGACAATACACGCTGAAGACTTTCTGAAGCAATACTTTGCTTCTATTGCCAGGTCCAGCAGCGATGAGTATCACGAAAGACTGGCCGAGGTGATGATGTACATTGAAGGAAACGGATCATACAGCTTATTGGAAAAGGAGCTTGTCTTTGCTGCCAAAACAGCGTGGAGAAACGCTTCAAGATGCATTGGAAGAATACAGTGGAACAACTTAAAGGTGTTTGACGCTCGCGATGCAAGAACTGCGAAAGAGATGTTTGATGCGCTGATGAGGCATTTGGAGTTCTCTCTTAACAAGGGCAACTTAAGATCAGCAGCCACCATTTTTCCTCAAAGGAGTGAAGCAAATAAGGATTTCCGTATATGGAATTCCCAACTGCTCGGCTTTGCTGGCTATCGGCAACCCAACGGTTCTGTGATCGGTGATCCAGCTAACGTGGAATTTACCGAGATGTGTCAGTCGCTGGGTTGGAAAGGAAATGGCGGTAGATTTGATATCCTGCCCCTGGTGTTACAAGCCCTTGGAGGAAGGCCCGAGTTCTTTGACATACCCAATGATCATGTTTTTCGGGTGAAACTAAAACATCCCAAATACCCTTGGTTTGAGAAACTGGGTTTAGAGTGGTACGCTATTCCTGCTGTGTCCAACATGATGCTGGATGCTGGAGGTCTGGAATTCACAGGCACAGCATTCAGTGGTTGGTATATGGTGACAGAAATTGGAGCAAGAGATTTAGCAGATGAGCAACGCTACAACATGTTGGAGGTTGTTGCCAAGAAAATGGGCTTGGATACCACAAGTAACGCGTCCTTGTGGAAAGATTTTGCATTGGTGGAACTCAATTATGCTGTTATGTCCAGTTTCACGGAGGCTGGAATCACACTTGCTGACCATCACACTACATCAGAGGCCTTCATACAACACATGAAAAAAGAGGTGAAGCTGCGAGGTGGCTGTCCAGCGGATTGGGTGTGGATTGTTCCTCCAATGTCAGGCAGTGCAACAGGGGTGTTCCATCAGGAAATGCTGAATTATGTTTTGAAACCAAGTTATGAATATCAGCCCAATCCTTGGACAGTTAACAGCGTTCATGGAGAGACCAAGAAGAAAATGTCCTTTAAATCAGTGGCCAGAGCTATTCGTTTTGTTGCTTTCTTGATGAGAAATGTTTTGTCGAAACGGACAAAAGCCACAATCTTGTTCGCAACAGAAACAGGGAGGTCAGAGAGATTCGCTTGGAATTTAGCCAAGGTGCTGTCGCACATCTTTGATGTTAAGGTTTTATGCATGGATGAATACGAGCACAGGCAGCTTGTTCATGAGAAACTGCTGTTTGTTGTTACAAGCACATTTGGCAACGGAGAATCCCCAGAAAATGGAGCGAGCTTTGCTGCCTTCTTAAAAGGCTTGAAGAATGAGACTACAAGACCTTTGAAAAACCTGAGATATTCAGTTTTTGGACTGGGATCCAGGGCTTATCCTGATTTTTGCGCCTTTGGACACTACGTGGATGATCACTTGAGGCAGCTTGGGGCCCAGACAATTCTAACCATGGGGGAGGGGGATGATTTGGCCGGCCAGGAGGAGTCATTTAAGGAGTGGACAAAGGATGTGTTTAAGATGGCGTCTAATAGCTTTGGAGTTAACACTGAAGCTGCAAGCAAAGTGGTCAGTGACTCGTTAAAAGAGATGGTCTCAGGCTGGAGTCCAGGCCTTTACCGTTGGGTGAGCGACAATACAATACCAATGGACCTTTGTACAAATCTTTCCAAGGCTTACAACAAGACTGTATGCTCAGCAAAAGTTATTTCAGTGACTGAACTTCAGACAAAGCGTTCAAGGCGCTCGACTGTTCTGGTTAAGCTAGACACAGGAAACGCAACACAGCAACTGGCCTTTCAACCAGGAGATCACGTGGCCATTTTTCCCGCTAACAAGGCAAGTTTGGTGCAGGAGCTGATCGACCTTATGCACGTAAAACCTGATCCGAACCAGCCAATCAGGATTGAGGTCGCCCACGAAGACTCAGGCAAACAAAGTGGAACAATGACGTGGAAGCCATTCAATCGACTTCCCGCTGGCTGCACATTGACAGAGGCACTGACGAGATACCTCGATATCACAGCTGTTCCAACACCGCAGATGCTCAAGTATTTAGCAAAGCTGGCAACAAGCACACTGGAAAAGATGCAGCTTGAGGCCCTTGGAAAGGGTTACTCTTGTTACGAGGAATGGGCCCTACAAAAGGAATGCAACATCTTCGAGACACTGCGAGAGTTTCCGTCTGTTAAGGCTACCGCAGACCTACTTCTCACACAACTTCCGGCTCTGCAACCGAGATTCTACTCAATTTCCTCTTCCCCTGACGTGTACCCCAAAGAAATTCATGTAACAGCGATGGTATTTGAATACAAAAAGAGAGGTGGTAAAGGTCCAATGCACGAGGGTGTCTGCTCCAAATGGCTTCAGTCATTGAAATCTGGCCAAGCTGTTCCTTGTTACATCAGACAAGCCCAGGCCTTTCATCTTCCATCCGATGGCTCCGCACCATTGATCCTTGTAGGGACTGGAACAGGTATCGCTCCTCTGCGCTCCTTCTGGCAACAAAGGGCTATTATTGCCGATCATCAAAATTTCTCACCTGAAGAAGCTCTGGAGTTTATCCGCAAAATGAAGTCATCAAGCCAATACCACGAAGACATCTTTGAAGTCCCTCGAAAGATCAAGGAACCAAAGGAACGTGGGTGAGGACATGGAAGGTCATGAATGGTGTGGTGCTACTGAGTCAGACGTTGAGTGTGAACTTGCTGAGAAACTTGTAGAACCTTTCGTGTATACAAAGAAGTCGATAAGTCGATTGGGCCGGATACGGTGGAGATATTTGTTGCCATTGTTTAGACATTTATTTAACAGCATACAGCTGCTGGGCACGTTTCTGCACAAGGAAAGAAAATGCGAgtagagagttttcattcaaGACATAAACTCGCCATAGAAAGGGAAAAGAAGAAGAACCAAGACCAACGAGATCGCACTTAATCGACCCAGAAACTGTACCAGAGCCAAAGAAAGAGACATGGCTGAAATAAGTTCCCAAAGAAAGGAAATAAAGACAAGAACCAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z0J4	Nitric oxide synthase 1 OS=Mus musculus OX=10090 GN=Nos1 PE=1 SV=1
P29476	Nitric oxide synthase 1 OS=Rattus norvegicus OX=10116 GN=Nos1 PE=1 SV=1
P29475	Nitric oxide synthase 1 OS=Homo sapiens OX=9606 GN=NOS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001036 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02898 all species →	NO_synthase	Nitric oxide synthase, oxygenase domain	Domain	Interproscan
PF00667 all species →	FAD_binding_1	FAD binding domain	Domain	Interproscan
PF00258 all species →	Flavodoxin_1	Flavodoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050607 all species →	Family	Nitric Oxide Synthase (NOS)	Interproscan
IPR004030 all species →	Domain	Nitric oxide synthase, N-terminal	Interproscan
IPR023173 all species →	Homologous_superfamily	NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily	Interproscan
IPR036119 all species →	Homologous_superfamily	Nitric oxide synthase, N-terminal domain superfamily	Interproscan
IPR008254 all species →	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR012144 all species →	Family	Nitric-oxide synthase, eukaryote	Interproscan
IPR044943 all species →	Homologous_superfamily	Nitric oxide synthase, domain 1 superfamily	Interproscan
IPR044940 all species →	Homologous_superfamily	Nitric oxide synthase, domain 2 superfamily	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR044944 all species →	Homologous_superfamily	Nitric oxide synthase, domain 3 superfamily	Interproscan
IPR003097 all species →	Domain	Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding	Interproscan
IPR029039 all species →	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR001094 all species →	Domain	Flavodoxin-like	Interproscan
IPR001709 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43410 all species →	NITRIC OXIDE SYNTHASE OXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004517 all species →	Molecular Function	nitric-oxide synthase activity	Interproscan
GO:0006809 all species →	Biological Process	nitric oxide biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0020.g3.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0020.g3.t2 across 24 RNA-seq samples of Acropora selago. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.