Gene detail

Detailed information of asel_s0025.g86.t1 in Acropora selago

Genomic Location: sc0000025_pilon:1217577...1223537
NR annotation: XP_029179410.2, calcium-independent phospholipase A2-gamma-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XTS1	Calcium-independent phospholipase A2-gamma OS=Oryctolagus cuniculus OX=9986 GN=PNPLA8 PE=1 SV=1
Q9NP80	Calcium-independent phospholipase A2-gamma OS=Homo sapiens OX=9606 GN=PNPLA8 PE=1 SV=1
D3ZRC4	Calcium-independent phospholipase A2-gamma OS=Rattus norvegicus OX=10116 GN=Pnpla8 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006168 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01734 all species →	Patatin	Patatin-like phospholipase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR045217 all species →	Domain	Patatin-like phospholipase domain containing protein 8-like	Interproscan
IPR002641 all species →	Domain	Patatin-like phospholipase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24185 all species →	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2-GAMMA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019369 all species →	Biological Process	arachidonate metabolic process	Interproscan
GO:0047499 all species →	Molecular Function	calcium-independent phospholipase A2 activity	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16815	PNPLA8; calcium-independent phospholipase A2-gamma	-	Lipid metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0025.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

21TPM > 0

1Conditions

17.1Max TPM

8.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	21	8.71	17.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	17.11
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	13.43
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	13.25
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	12.58
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	12.06
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	11.70
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	10.52
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	10.32
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.98
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.83
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.37
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.28
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.82
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.71
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.67
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.15
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.95
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.77
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.39
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.10
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.03
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.