Gene detail

Detailed information of asel_s0026.g167.t1 in Acropora selago

Genomic Location: sc0000026_pilon:2239770...2269191
NR annotation: XP_029199753.2, epithelial cell-transforming sequence 2 oncogene-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0026.g167.t1

ATGTCAGCTGATATACTTCGAAACGTCCGGTCAAGTTCTTCAAATGGCAGAAAAGCAAGAAAAACAGCTGAAGAAAACCAAATAGTGGGCGCCAAACGCAACACCAAGGCTCGAATTTCACCCTCTGTTGTCGACCATGGGTTTCATACTGACAAATACAAAACACATTACAGTGCTTGGACGCCAATAATTCACAGTGCTTCAAATAGTCAAATTTTCTCGGAGCGACTGGATCTTATCGGACATTGGTTTTCCATGTGGACAGATGATCAACGGAAAAAATTCTTGAACTTTATCCTAAAGAAGTGCACAAAATCTCAATTGCGATTTGTCAATGATGGTTGGTGCAAAAAGCAGCTTCCAATCCATCACTTAGACTTCACAACTGTTCTTCCACGCTTTATATCCACATATATATTCTCCTTTCTGGACCCAAGGAGCCTTTGTCGCGCAGCTCAAGTGTCATGGCATTGGAAATTTCTAAGTGAACAGGATGTGTTGTGGATGCCGAAGTGTTTACAATTTGGCTGGTATTTGCCATACACACCAAGTTGCAGGGAAAATGGATGTTGGAAGCATCACTACATCATGTGTACTTACTCCCTTGATATGCAAGCCCCATCTAAAATGGTGGAAACTTATGGCCAGTTTACCCGCAACACCACCAAAGTGATAAGTAAAAAGGGCAGTGGACACAAAATTGTAGGAGCAAAAAGAATAACCAAGGATGTCACATACTACAGACAAGAAACACGCCGTCCACCATGGTTAGACACAGACCCCAACCCGTCTGACTTGGAGCAGGCCAGAAAAGCACTCCTTTATGAGCACAACCCTAACCTCCCTCAGTCTCCTGATCAAATGAGAGCTAAGAGACTAGGACTGAGTACCAGACCCTCACACAAAAGATCACATACAGCACCAGGCAAACTAATCATGTCAAAGACAAGCCAAGTTTACGATGTAAATGCCAATGCAGTTGACAATAACAAGGAGCTGTTCCATCCCTCCAAGCTGACACTTACAGAGGCCTTAGCCCTCGAGTCTGGTGTTGACGAATCCGTGATTGAGCAGCCATGGTCCAAGCCTTCATTGGCATCACCAGTGCGCAGGCACGACTTGACACTGGGTATTCATCCAAGCAAGCACGACTCATTCTTACAGTTAAGAACCACACAGGCGCGTCAAAGCTGTCCAAATCCTACCGTGATATTTATCTCGTCCGAAATACCGGCCTGCGAGTTGCTTCTGGATGCTGTAATGTTTGGAGTCATCGCAATTCCGTATGATTATGAAGGAACTACGCTTGACGTCCTCTTAGAAAAACTCAGACTTCAACTGAATGCAAGGCAGGCCAAGTGTATAGGTTTCTTTGTCAGTGGAGAATCGGGTACAGTGCGGCTTGTTAAAGACCAAACGCTTTCGGAGACTACACTAAACGAACCGAATATGAGACACTTTTGGGAAACTGTAGCGACAAGTATTTCAGCGCGGGAAGCAGGAGGACATGTGGACATCTTTTTACCGCTGGCGGAAACAGAACAAGGTATGGATCTCCTTGCTCAGCTTGACCTATTGACAAACATGCAGTTTTCATGTCCCACCGGAATAACTGGATCGTTTCCCAGAGTTGAAAGCGAGTGGCTTTTCGTTCTTAATGGCATAACCCCTCCCGCTTGGTATTTCAACATGACAAAACTTGGTGCCTGGTCGGAAACTGTAGACTATATTGAGGAATGTGTCGATGTAGTGAAAAAGAATCTTCATTCCTTCTTCAACGAAGAACAAAGAAATCTAGCCAGTCGTCTTGTCGGGCAAATCACATTTGAGGCACTGCACATGTGCGAAATTTACAGGATCTCTGAAATCTCTTCGACTCTTGTGGATGCTGTCATTTTAGCGGGAAGGGATAACGCAGCCAAAAATTGGAATGATCCTGTTCAAGAACTTATTCGTTGTCTACAAAAGAATGGCTATAAAGACAAGAAAAAGAAGGAGACAATGAAAACAGGAGAAACCTCGGATGAAGAAAGCTCCGATGGTGAATTTGAGGACAAATTTGTTATCGCAAGCGAACTTAAGGTTCCAGTTTCTAGCAAGGAATTTTCTGCAATGAAGACAGGGACGTCAGCCATTGAAAAAAGAACATTACTTGCTCAGGAGATCTTGTCATCCGAGTTGACTTACATGAACCATTTGTCTGTAATTCAAAGCGTTTTCAAGAAGCCCCTTGAAGCAGCCCTCGCCTCAAACAGAGCCATAATCAGCTTGGCGAACATTCAGAGTCTGTTTGCTGACACTGAAACATTACTGGCGCTTAGCAGCGCCTTGTCAAATGACCTGTCAAACCGTTTGGAACAGTGGAATTCACATCAGATGCTGGGAGATGTATTTGTCAAATTTACAACACAACTTCGTGCTTATACTAATTTCCTCAATAACTATCCTGTGACACTTCAAACGCTTGAACGGTGTAAGGAACAAAATCCTCAGTTTCGTTCATTTCTCGGACGCCACGAAAAACAGCCAAATACAAAAATGATGAGTTTAGCAGAATTGTTGTTTCTTCCTGGAAAACAACTGACATGCTATGTTCAGCTTTTGGAGTCGTTCCTACGGTACACGCCACCGGATCACCAAGATCGAGGAAACATCGTGAAGGCCATTGCTAAATTCAAGGACCTAGTTCATTTATTTAGACAGTATAAGGAGCGCTTGGAAAGAGAGACGTTTTTGCAAGATCTACAGAAGAGGATAGTCAACTGCCCCGTTCTCGCCGAAAAAAGTCGTCATTTTGTTCGTGAAGATGATGTCATCATGCTGTCAACTCCAAACATTGGGAAAGAAGTCAAACCAGAATTGAGAGTTTATCAACAAGTTGGGGATCTTGGCATGTTTCTGTTCAATGATGCCTTAATCATAGCCACTCTGAGTTTCAAATTTGTACCTTTTCAAAGACTTGTTCGAAAGAATTACAAGTTTCAAGCGTGTTTGTCATTAAAGAAATTAAAAGTGGAAAATCTTGCTGATTCTAAATATGTGAAAAACGCTTTTACCATTGTGTCACCGAAGAGATTGTGGCTGTGTCAGGCGTACTCGTGGGAACAGAAATATCAGTTGATTTCAGTTCTGGAAAGTTCCATCGTTGCAGCGCTGGAAAAATGA

Transcript

asel_s0026.g167.t1

GGACGCCGAAATTTGTTGTCAAACGTGTGATCTGACATTGTTCTTCTCTACGTGGTTACACAGATTCGAAAATATAGGAAAATAATCTTGATATGTCAGCTGATATACTTCGAAACGTCCGGTCAAGTTCTTCAAATGGCAGAAAAGCAAGAAAAACAGCTGAAGAAAACCAAATAGTGGGCGCCAAACGCAACACCAAGGCTCGAATTTCACCCTCTGTTGTCGACCATGGGTTTCATACTGACAAATACAAAACACATTACAGTGCTTGGACGCCAATAATTCACAGTGCTTCAAATAGTCAAATTTTCTCGGAGCGACTGGATCTTATCGGACATTGGTTTTCCATGTGGACAGATGATCAACGGAAAAAATTCTTGAACTTTATCCTAAAGAAGTGCACAAAATCTCAATTGCGATTTGTCAATGATGGTTGGTGCAAAAAGCAGCTTCCAATCCATCACTTAGACTTCACAACTGTTCTTCCACGCTTTATATCCACATATATATTCTCCTTTCTGGACCCAAGGAGCCTTTGTCGCGCAGCTCAAGTGTCATGGCATTGGAAATTTCTAAGTGAACAGGATGTGTTGTGGATGCCGAAGTGTTTACAATTTGGCTGGTATTTGCCATACACACCAAGTTGCAGGGAAAATGGATGTTGGAAGCATCACTACATCATGTGTACTTACTCCCTTGATATGCAAGCCCCATCTAAAATGGTGGAAACTTATGGCCAGTTTACCCGCAACACCACCAAAGTGATAAGTAAAAAGGGCAGTGGACACAAAATTGTAGGAGCAAAAAGAATAACCAAGGATGTCACATACTACAGACAAGAAACACGCCGTCCACCATGGTTAGACACAGACCCCAACCCGTCTGACTTGGAGCAGGCCAGAAAAGCACTCCTTTATGAGCACAACCCTAACCTCCCTCAGTCTCCTGATCAAATGAGAGCTAAGAGACTAGGACTGAGTACCAGACCCTCACACAAAAGATCACATACAGCACCAGGCAAACTAATCATGTCAAAGACAAGCCAAGTTTACGATGTAAATGCCAATGCAGTTGACAATAACAAGGAGCTGTTCCATCCCTCCAAGCTGACACTTACAGAGGCCTTAGCCCTCGAGTCTGGTGTTGACGAATCCGTGATTGAGCAGCCATGGTCCAAGCCTTCATTGGCATCACCAGTGCGCAGGCACGACTTGACACTGGGTATTCATCCAAGCAAGCACGACTCATTCTTACAGTTAAGAACCACACAGGCGCGTCAAAGCTGTCCAAATCCTACCGTGATATTTATCTCGTCCGAAATACCGGCCTGCGAGTTGCTTCTGGATGCTGTAATGTTTGGAGTCATCGCAATTCCGTATGATTATGAAGGAACTACGCTTGACGTCCTCTTAGAAAAACTCAGACTTCAACTGAATGCAAGGCAGGCCAAGTGTATAGGTTTCTTTGTCAGTGGAGAATCGGGTACAGTGCGGCTTGTTAAAGACCAAACGCTTTCGGAGACTACACTAAACGAACCGAATATGAGACACTTTTGGGAAACTGTAGCGACAAGTATTTCAGCGCGGGAAGCAGGAGGACATGTGGACATCTTTTTACCGCTGGCGGAAACAGAACAAGGTATGGATCTCCTTGCTCAGCTTGACCTATTGACAAACATGCAGTTTTCATGTCCCACCGGAATAACTGGATCGTTTCCCAGAGTTGAAAGCGAGTGGCTTTTCGTTCTTAATGGCATAACCCCTCCCGCTTGGTATTTCAACATGACAAAACTTGGTGCCTGGTCGGAAACTGTAGACTATATTGAGGAATGTGTCGATGTAGTGAAAAAGAATCTTCATTCCTTCTTCAACGAAGAACAAAGAAATCTAGCCAGTCGTCTTGTCGGGCAAATCACATTTGAGGCACTGCACATGTGCGAAATTTACAGGATCTCTGAAATCTCTTCGACTCTTGTGGATGCTGTCATTTTAGCGGGAAGGGATAACGCAGCCAAAAATTGGAATGATCCTGTTCAAGAACTTATTCGTTGTCTACAAAAGAATGGCTATAAAGACAAGAAAAAGAAGGAGACAATGAAAACAGGAGAAACCTCGGATGAAGAAAGCTCCGATGGTGAATTTGAGGACAAATTTGTTATCGCAAGCGAACTTAAGGTTCCAGTTTCTAGCAAGGAATTTTCTGCAATGAAGACAGGGACGTCAGCCATTGAAAAAAGAACATTACTTGCTCAGGAGATCTTGTCATCCGAGTTGACTTACATGAACCATTTGTCTGTAATTCAAAGCGTTTTCAAGAAGCCCCTTGAAGCAGCCCTCGCCTCAAACAGAGCCATAATCAGCTTGGCGAACATTCAGAGTCTGTTTGCTGACACTGAAACATTACTGGCGCTTAGCAGCGCCTTGTCAAATGACCTGTCAAACCGTTTGGAACAGTGGAATTCACATCAGATGCTGGGAGATGTATTTGTCAAATTTACAACACAACTTCGTGCTTATACTAATTTCCTCAATAACTATCCTGTGACACTTCAAACGCTTGAACGGTGTAAGGAACAAAATCCTCAGTTTCGTTCATTTCTCGGACGCCACGAAAAACAGCCAAATACAAAAATGATGAGTTTAGCAGAATTGTTGTTTCTTCCTGGAAAACAACTGACATGCTATGTTCAGCTTTTGGAGTCGTTCCTACGGTACACGCCACCGGATCACCAAGATCGAGGAAACATCGTGAAGGCCATTGCTAAATTCAAGGACCTAGTTCATTTATTTAGACAGTATAAGGAGCGCTTGGAAAGAGAGACGTTTTTGCAAGATCTACAGAAGAGGATAGTCAACTGCCCCGTTCTCGCCGAAAAAAGTCGTCATTTTGTTCGTGAAGATGATGTCATCATGCTGTCAACTCCAAACATTGGGAAAGAAGTCAAACCAGAATTGAGAGTTTATCAACAAGTTGGGGATCTTGGCATGTTTCTGTTCAATGATGCCTTAATCATAGCCACTCTGAGTTTCAAATTTGTACCTTTTCAAAGACTTGTTCGAAAGAATTACAAGTTTCAAGCGTGTTTGTCATTAAAGAAATTAAAAGTGGAAAATCTTGCTGATTCTAAATATGTGAAAAACGCTTTTACCATTGTGTCACCGAAGAGATTGTGGCTGTGTCAGGCGTACTCGTGGGAACAGAAATATCAGTTGATTTCAGTTCTGGAAAGTTCCATCGTTGCAGCGCTGGAAAAATGAATTCGTTACGTCAATCAGGGAAAACGCGCGTCTTGGCGCGACCGCACCCCGAAACAAGTACCGTTTAGTTTTAAACGGACGTTGTTAGTCGCTTAAGAAAGCCGTTTCCTTTTTTGCCGCAGCTTCCGCGACAGCATCTCTTGAAAGACTGTCTTTCTATAGTTTACCTCCATCGCTCGAAAATGTCTTTCAAGCTCTCATTTACACAAGAAAACGTCCGGGCGAATTGAAGGAAAAAAGTGTAAATGGCGTGGGTCCAAGATTAAATTGAGACTAAAAAGAGTGGAACTAAATTTGAAAGTTATTGTATTTTTGTTAAGTCGTAATATTTACATTATAGATTTGAGATATTGTGTAGAGAGATATTTTTTGAATATTTATTCCGTAACCTTCAAAATTTGTTTTCCTTTCGTTTTCAATAAAATGTTTTTGTAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q008S8	Epithelial cell-transforming sequence 2 oncogene-like OS=Homo sapiens OX=9606 GN=ECT2L PE=1 SV=2
Q9QZM9	F-box only protein 16 OS=Mus musculus OX=10090 GN=Fbxo16 PE=2 SV=1
Q8IX29	F-box only protein 16 OS=Homo sapiens OX=9606 GN=FBXO16 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002132 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR052805 all species →	Family	GEF and Ubiquitin-Proteasome Regulators	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46857 all species →	EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0026.g167.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0026.g167.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

22TPM > 0

1Conditions

22.3Max TPM

7.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	22	7.92	22.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	22.31
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	15.21
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	10.64
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	10.61
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	10.46
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	10.23
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.99
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.73
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.26
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.16
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.92
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.61
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.58
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.56
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.43
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.12
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.12
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	5.58
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.80
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.51
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.43
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.88
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.