Gene detail

Detailed information of asel_s0026.g86.t1 in Acropora selago

Genomic Location: sc0000026_pilon:989073...995135
NR annotation: XP_015756155.1, PREDICTED: dehydrodolichyl diphosphate syntase complex subunit nus1-like [Acropora digitifera]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007654 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01255 all species →	Prenyltransf	Putative undecaprenyl diphosphate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036424 all species →	Homologous_superfamily	Decaprenyl diphosphate synthase-like superfamily	Interproscan
IPR001441 all species →	Family	Decaprenyl diphosphate synthase-like	Interproscan
IPR038887 all species →	Family	Dehydrodolichyl diphosphate synthase complex subunit Nus1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21528 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016765 all species →	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0019408 all species →	Biological Process	dolichol biosynthetic process	Interproscan
GO:0045547 all species →	Molecular Function	dehydrodolichyl diphosphate synthase activity	Interproscan
GO:1904423 all species →	Cellular Component	dehydrodolichyl diphosphate synthase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0026.g86.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0026.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

22TPM > 0

1Conditions

75.3Max TPM

41.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	22	41.03	75.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	75.30
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	51.82
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	51.02
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	50.94
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	49.33
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	47.85
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	47.40
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	47.31
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	46.85
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	46.11
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	46.01
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	45.69
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	44.83
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	43.63
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	41.68
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	40.41
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	37.71
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	37.38
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	37.38
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	32.27
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	32.16
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	31.73
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.