Gene detail

Detailed information of asel_s0031.g86.t1 in Acropora selago

Genomic Location: sc0000031_pilon:1021763...1023418
NR annotation: XP_029212505.1, LOW QUALITY PROTEIN: centrosomal protein of 83 kDa-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009644 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00836 all species →	Stathmin	Stathmin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000956 all species →	Family	Stathmin family	Interproscan
IPR036002 all species →	Homologous_superfamily	Stathmin superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10104 all species →	STATHMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031110 all species →	Biological Process	regulation of microtubule polymerization or depolymerization	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007019 all species →	Biological Process	microtubule depolymerization	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0031175 all species →	Biological Process	neuron projection development	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0031.g86.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0031.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

22TPM > 0

1Conditions

22.0Max TPM

10.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	22	10.00	22.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	22.02
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	15.52
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	15.40
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.95
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.27
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	13.44
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	11.88
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	11.79
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	11.68
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	11.33
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	10.63
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.88
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.71
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.69
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	9.19
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.63
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	8.44
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.66
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.79
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.29
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	5.62
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	5.19
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.