Gene detail

Detailed information of asel_s0033.g86.t1 in Acropora selago

Genomic Location: sc0000033_pilon:1139193...1141524
NR annotation: XP_015755820.1, PREDICTED: mitogen-activated protein kinase 1-like [Acropora digitifera]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63085	Mitogen-activated protein kinase 1 OS=Mus musculus OX=10090 GN=Mapk1 PE=1 SV=3
P63086	Mitogen-activated protein kinase 1 OS=Rattus norvegicus OX=10116 GN=Mapk1 PE=1 SV=3
P46196	Mitogen-activated protein kinase 1 OS=Bos taurus OX=9913 GN=MAPK1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000798 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR003527 all species →	Conserved_site	Mitogen-activated protein (MAP) kinase, conserved site	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008349 all species →	Family	Mitogen-activated protein (MAP) kinase, ERK1/2	Interproscan
IPR050117 all species →	Family	Mitogen-activated protein kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24055 all species →	MITOGEN-ACTIVATED PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004707 all species →	Molecular Function	MAP kinase activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0033.g86.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0033.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

21TPM > 0

1Conditions

87.0Max TPM

42.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	21	42.94	87.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	87.03
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	76.15
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	66.18
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	62.85
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	56.03
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	55.17
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	54.48
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	54.17
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	53.72
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	47.47
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	46.38
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	45.93
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	44.91
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	41.35
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	39.44
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	38.76
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	35.46
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	35.01
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	34.52
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	31.67
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	23.96
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.