Detailed information of asel_s0034.g71.t1 in Acropora selago

Genomic Location: sc0000034_pilon:650554...655206
NR annotation: XP_044181449.1, E3 ubiquitin-protein ligase SHPRH-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q149N8E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens OX=9606 GN=SHPRH PE=1 SV=2
Q7TPQ3E3 ubiquitin-protein ligase SHPRH OS=Mus musculus OX=10090 GN=Shprh PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003108 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176
all species →		SNF2-rel_domSNF2-related domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR000330
all species →		DomainSNF2, N-terminalInterproscan
IPR038718
all species →		Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR019786
all species →		Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR052583
all species →		FamilyATP-dependent Helicase/E3 Ubiquitin LigaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45865
all species →		E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0140658
all species →		Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006974
all species →		Biological ProcessDNA damage responseInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for asel_s0034.g71.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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