Gene detail

Detailed information of asel_s0035.g23.t3 in Acropora selago

Genomic Location: sc0000035_pilon:379624...394795
NR annotation: XP_029208270.2, DNA-binding protein RFX2-like isoform X1 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0035.g23.t3

ATGGCGACCACACAATCGCAGCAAAGCTTTGTCGCGCCTAACTTCGATTCTGGCGATGTAAAATCGCAGGCGGGCGCCACGAGCAATGTGGCTTCATCCCCACAAGATTTGATCACTCAGCAAGTTGTAAGTGCGGCGAATGCACATGGCATCGTCGTTTCCTCTCAGAATGTGCAGCAGTCCCCTCATCAAACAACTTTGCCAGTCAACACTGTAACCTTAACAGTTCAACCGACACAACTGCAAGCTTCTCAAGTCACCATTCAACCGCAGATCATCACGGCCAACGTTATTTCGAGCGAAGACTTCCAATCTAAGGAAGGGTTTCAGACAGCTGAAGTGCACTACGTAGAAGGCCCGTCTGATCCCGCAATATACCCGAACGGGACACACTTGTCGCACATGATGCCAGTGTCCACTTATGTGGCCAATGCGTATCATTATAATGATGCAACGATGTTTGCGCAGCAAACTGCGGCGCCTTATATTGACGCAAGCCAGCAGCAACAGAATTTCACATCTGTCACTACACCAGGGGCTGTGACGACTGGTCAGGCTGGTTTTATACAGGTTACACCAGCAGGGGCAGCTATGCAGACCCAAAGGCATCCAATCACGCACACAACAAGGGCTTCCCCGGCGACAGTACAGTGGCTGGTTGACAACTATGAAACAGCAGAAGGAGTAAGCTTGCCACGGAGCACTTTATATAACCATTATCTACAACATTGTCAGGCAAATAAGCTGGACGCTGTGAATGCTGCGAGCTTTGGCAAACTTATCAGATCTGTTTTTATGGGACTGAGGACAAGAAGGCTGGGAACAAGGGGAAACTCCAAGTACCACTATTACGGAATTCGCATCAAGCCAAGCTCGCCACTTAATGCACTGTCTGATGAATCCCAAGTGGCTATGAGACAGTCGCCGTCCACTCAGAAAAGGCTGAAGCCAGCAACAAGATTAGACTCATCGGAAACAGGAGATGCAGCCACTCAGTCAACCGCTGTGTCGGCAGACCAGCAAGCACAGCAGTCACAGATGCAGCAACACCAGCAGTACCTGGGTGACGTGACACAGGGGCTGCCAGAGTTTGATGAATTGGATCTAAAGGGCATACCCCCTCCAGAGAATATTACAGAGCAGGATCTTGATACATTTGTAGATATGTACAGAGAACATTGTGAGGCTTTCCTTGATATGGTGGTCAGCTTACAGTTTAATTTAGTGGAGTCCCTGTGGCAGACATTTTGGCGACACCAATCTTCAGACAATAAATCTGCGCATGGAGATGATGATGAAGGGAGCAAAGATACTTGCGATGATGGAGAGTACGAGAGCAGACTCGCTCAGTCCAAACTTTTACAGTTGTGTGAATACGATCCAATCATTACATTTGTCAAGGGCTGTGATCAGGTTCTCTACCAGACTCTGGTGGAAGTCCTTGTTCCAGATGTGCTGAGACCAATTCCAGCTTCCCTAACTCAGGCTGTGCGGAATTTTGCAAAAGGTCTGGAGTCGTGGCTCCAGAATAGTCTGGATCAGATTCCAAAGAAGATGGCTGATGTCAAAGTCACGAGCTGCAGTGCATTTGCTCAAACTCTGCGACGTTACACTTCCCTGAATCACTTGGCCCAAGCAGCCCGAGCTGTTCTTCAGAACTCTTCTCAGATCACTCAGATGCTAGCTGATCTCAACAGGGTGGATTTTGCCAATGTACAGGAGCAAGCATCTTGGGTGTGTCAGTGCGATGACAGTGTTGTGTACCGACTGGAACAAGATTTCAAACTAACTTTACAGCAACAGAATTCTTTGGAGCAGTGGGCAACTTGGTTAGAAGGTGTTGTAGATCAGGTTCTCAAGCAACATGAAGGCACTGACGAGTTTCCGAAGGCGGCCAGACAGTTTCTCCTGAAGTGGTCTTTTTACAGCTCCATGATCATCCGCGATTTGACCTTGCGAAGTGCTGCCAGCTTTGGTTCTTTTCATCTGATTCGTCTGCTGTATGATGAGTACATGTTTTACCTGGTGGAACACAAAGTTGCCAAAGCAATTGGGGCGTCACCAATGGCTGTCATGGGAGAGTTTGTCGGTCTTGGATCAGCTCTGTCCATGGACCTGGATACAGTGGATGGAAATCTTCTAGCGGAGCAGCCAGACTTGACATGTAAGTGCGCAGCAATAAGAAATAAGGTAGAAGTGACTTTAATGCTGACGACAAATGATAGACAATCTATTTGA

Transcript

asel_s0035.g23.t3

CTTTCACTTTCCGCTATTTATTTAATCCGGGAACTTTTCAAAGCCCTTCATTGTCAACAAGGCCGCCCCGCAGTGAAGCAAGGAGCAAGTGGTTGTCGTGGCGAGGGTGAAAGCGGTTGCGAAGTTCGTGTATGTTGTCAGCAACGACCTAAGTAGAAGTCTCTCTCCAAGGCGACAGTGTAGTCAAGGTTACAAAGTCTTCCCAGAATTTCCTTCGAGCAATTATTCCTCAACCGATCGCCGAATGGCGACCACACAATCGCAGCAAAGCTTTGTCGCGCCTAACTTCGATTCTGGCGATGTAAAATCGCAGGCGGGCGCCACGAGCAATGTGGCTTCATCCCCACAAGATTTGATCACTCAGCAAGTTGTAAGTGCGGCGAATGCACATGGCATCGTCGTTTCCTCTCAGAATGTGCAGCAGTCCCCTCATCAAACAACTTTGCCAGTCAACACTGTAACCTTAACAGTTCAACCGACACAACTGCAAGCTTCTCAAGTCACCATTCAACCGCAGATCATCACGGCCAACGTTATTTCGAGCGAAGACTTCCAATCTAAGGAAGGGTTTCAGACAGCTGAAGTGCACTACGTAGAAGGCCCGTCTGATCCCGCAATATACCCGAACGGGACACACTTGTCGCACATGATGCCAGTGTCCACTTATGTGGCCAATGCGTATCATTATAATGATGCAACGATGTTTGCGCAGCAAACTGCGGCGCCTTATATTGACGCAAGCCAGCAGCAACAGAATTTCACATCTGTCACTACACCAGGGGCTGTGACGACTGGTCAGGCTGGTTTTATACAGGTTACACCAGCAGGGGCAGCTATGCAGACCCAAAGGCATCCAATCACGCACACAACAAGGGCTTCCCCGGCGACAGTACAGTGGCTGGTTGACAACTATGAAACAGCAGAAGGAGTAAGCTTGCCACGGAGCACTTTATATAACCATTATCTACAACATTGTCAGGCAAATAAGCTGGACGCTGTGAATGCTGCGAGCTTTGGCAAACTTATCAGATCTGTTTTTATGGGACTGAGGACAAGAAGGCTGGGAACAAGGGGAAACTCCAAGTACCACTATTACGGAATTCGCATCAAGCCAAGCTCGCCACTTAATGCACTGTCTGATGAATCCCAAGTGGCTATGAGACAGTCGCCGTCCACTCAGAAAAGGCTGAAGCCAGCAACAAGATTAGACTCATCGGAAACAGGAGATGCAGCCACTCAGTCAACCGCTGTGTCGGCAGACCAGCAAGCACAGCAGTCACAGATGCAGCAACACCAGCAGTACCTGGGTGACGTGACACAGGGGCTGCCAGAGTTTGATGAATTGGATCTAAAGGGCATACCCCCTCCAGAGAATATTACAGAGCAGGATCTTGATACATTTGTAGATATGTACAGAGAACATTGTGAGGCTTTCCTTGATATGGTGGTCAGCTTACAGTTTAATTTAGTGGAGTCCCTGTGGCAGACATTTTGGCGACACCAATCTTCAGACAATAAATCTGCGCATGGAGATGATGATGAAGGGAGCAAAGATACTTGCGATGATGGAGAGTACGAGAGCAGACTCGCTCAGTCCAAACTTTTACAGTTGTGTGAATACGATCCAATCATTACATTTGTCAAGGGCTGTGATCAGGTTCTCTACCAGACTCTGGTGGAAGTCCTTGTTCCAGATGTGCTGAGACCAATTCCAGCTTCCCTAACTCAGGCTGTGCGGAATTTTGCAAAAGGTCTGGAGTCGTGGCTCCAGAATAGTCTGGATCAGATTCCAAAGAAGATGGCTGATGTCAAAGTCACGAGCTGCAGTGCATTTGCTCAAACTCTGCGACGTTACACTTCCCTGAATCACTTGGCCCAAGCAGCCCGAGCTGTTCTTCAGAACTCTTCTCAGATCACTCAGATGCTAGCTGATCTCAACAGGGTGGATTTTGCCAATGTACAGGAGCAAGCATCTTGGGTGTGTCAGTGCGATGACAGTGTTGTGTACCGACTGGAACAAGATTTCAAACTAACTTTACAGCAACAGAATTCTTTGGAGCAGTGGGCAACTTGGTTAGAAGGTGTTGTAGATCAGGTTCTCAAGCAACATGAAGGCACTGACGAGTTTCCGAAGGCGGCCAGACAGTTTCTCCTGAAGTGGTCTTTTTACAGCTCCATGATCATCCGCGATTTGACCTTGCGAAGTGCTGCCAGCTTTGGTTCTTTTCATCTGATTCGTCTGCTGTATGATGAGTACATGTTTTACCTGGTGGAACACAAAGTTGCCAAAGCAATTGGGGCGTCACCAATGGCTGTCATGGGAGAGTTTGTCGGTCTTGGATCAGCTCTGTCCATGGACCTGGATACAGTGGATGGAAATCTTCTAGCGGAGCAGCCAGACTTGACATGTAAGTGCGCAGCAATAAGAAATAAGGTAGAAGTGACTTTAATGCTGACGACAAATGATAGACAATCTATTTGATCTAAAATCACGACAAGACCCTACTCCACTGCATAAATTCCAGCGTTATTTCATCCTCGGCAAATTATAATATACAACtacccgccgc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2GV50	DNA-binding protein RFX2 OS=Rattus norvegicus OX=10116 GN=Rfx2 PE=1 SV=1
P48379	DNA-binding protein RFX2 OS=Mus musculus OX=10090 GN=Rfx2 PE=1 SV=2
P48377	MHC class II regulatory factor RFX1 OS=Mus musculus OX=10090 GN=Rfx1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000698 (this species only)
Transcription factor family	RFX · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02257 all species →	RFX_DNA_binding	RFX DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR039779 all species →	Family	RFX-like DNA-binding protein	Interproscan
IPR003150 all species →	Domain	DNA-binding RFX-type winged-helix domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12619 all species →	RFX TRANSCRIPTION FACTOR FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09173	RFX1_2_3; regulatory factor X 1/2/3	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.