Gene detail

Detailed information of asel_s0036.g4.t1 in Acropora selago

Genomic Location: sc0000036_pilon:115176...126855
NR annotation: XP_044180987.1, uncharacterized protein LOC122962138 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s0036.g4.t1

ATGTGTGTGTCCACCGAATTAAGGCCATGTATTACAGAACCTGTCATTCATGTAAGCAAACCAAATGTACAAGAGTCTGTTGTTTTCTACACTGTGGAGACGCAACTCACTGACGCCGAAGTAGTGCAAGGCCCGTGCACGTTTATCGAACCAGTAGTTTTGTGTCGTGAACTTCATGTGGAAACAGCCACATCCTGTGTTTTGGATAGTACAATTCACACGACATGTCATAGCCCGGAACCAGCGGTTAGTAAGAATGTCAACTCAGATAGGGTCCATGTTAATGCCTCGCATCCGTCACGCACCCATCGCGAAACCAGAAGTGTCAGTGAAAATCTTGGCGTATCACAAGTTAAGCTTGTCCATTTTCTTTTAAGAATACTATGTTCCTATTACGGAAAGGACACGCCGAAGAAAAACCTTTTGGCCAAGAAGACCCATGTTAAGCAAACTATTGGCATTAGCATCCCTTCGGTTCAGATGGCTGATCTGCGAAAAGAAGACCAAGACCCAACCAAATTTACCCAAGGCGATGTACCTGTTTGTTCTGATGTCAACGAAGATCACTTGTTATGCCCTGAGGTCAAGGTCGATTATTTAAATGACGTTTACGAAGTTAATGACCGATTTATAGCTCTCGTAAGTCACGACATTCTGCCACCGTCACGCGACACCAACAATGTTTCAATTAATAGAAGTGTTTGTGATACTGAGGTCACGTTTTTAGTAGACACAGGCGCTAACGTCACTGCTATTAAAGCAGATATTTGGCGACAAATTCCACCCCCAACTAAACATCCTACATCTCAAACGACGATTAGTCACATTAAGTCGGTTAGCGGAGAGTCGATTCCAGTGTTAGGTCAAGTTGAAGTACCTTTCCACATTAATTCTAGAAGCTATCCTTTCAAGGCCTTGATAATTGAAGCTATGGCTTATGACGCAATACTAGGTCGCGATTTCCTAGAGTTTTATAAAGCGAAGATTGACTTCGAGCGGCGCACTTTAACCCTCGAAGGTGATTCCAGTACTTTCGATGAATTTGACCTAGAGACCAATACAAAACATTTGGAACCAGGGGTGTTCGCCGTGCATGCCCAGTCCTCATTTATAATTCCACCCTGCACCGAAATCATTGTACCAGGCGAACTGGATTCTAGCTGTGTAGTAGCATCAACTGCACTTTTACAGCCTCGACCCGAATTACCAAAACGTTACCAAATAATGGGAGCGGCGCAGTTGGTTAAGGTTTCTAATAACACTTTCATTCCAGTTAGACTACTAAATCCAACCTCCCAACCGATTCACATCTATCGTAGAACGAAACTGGCCGAAATCTCGTTAGTCGACCCAGAGATTGCCACTTATGAATTAGTAAGATCAGATCTCGAAGCGGAGGCAAATCGCGATATTCCTACTGCTGTGGATGCTGAACCCCGAGTACCCCTAGACGTCGGTAACGTTGGTTTGACCCAGACGCAACGAACTCGGCTTCAGGCCCTTCTCACGCGGTACGATGATATTTTTGCATACACGCCGGACCAATTGGGCAGATGTTCAGTTGTGAAACATCGAATCGACACTGGAAACCACCCTCCAGTTCGGCTTAGTGGACACCGAGTCTATGGTTACTCTCTTGTGGGTGAGCAGTGTTTTGATGTGCGACGCTATTTATCAACAGCGAATATCACTCTCAACTTCCTAGCTGGTGTCGATGGATTGAAGTATGGAAACGTTGTTCAACGTGCGTCGAACTCTATTGAATTTTTGAGATTTTTCACTGAAGCGTCACAAACAGTTGACCCAAATACCTTAAGGCCAGTTTTGGAGGTTGGAGACATTGTAGTGGTTGACAATTTCGCTACCCATCACGGTGATGCCGAAGTGGCTCTTCGCAGTTTTTTTAATGATGTGGCAATGGAACTCTTGTATTTGCCAACTTATTCTCCTGACCTCAACCCTGATGAAGAAGTTTTTTCAAAGCTGAAATACCTCTTGAAATACCAATATCAAGATATTGTGTTTGAAAATTTGGAATATGCTGCATGGTGTGCAGTCGGTGACCTAGAAGCTGCTGACATGTACGACTATTACCGCCACGCTGGATATTTGATATGA

Transcript

asel_s0036.g4.t1

CTCATCGGTGGAAGAAGGTACAAATTTTCAAGACAATAATAGTAAAGTCGTATCACAATGTTATGTAACACAAAGATTTGAAGATAATTCAGTTATTTCGTCACAAGAAATTCAAGTTTTCCCCGCCGAAGCCAGTATGTGTGTGTCCACCGAATTAAGGCCATGTATTACAGAACCTGTCATTCATGTAAGCAAACCAAATGTACAAGAGTCTGTTGTTTTCTACACTGTGGAGACGCAACTCACTGACGCCGAAGTAGTGCAAGGCCCGTGCACGTTTATCGAACCAGTAGTTTTGTGTCGTGAACTTCATGTGGAAACAGCCACATCCTGTGTTTTGGATAGTACAATTCACACGACATGTCATAGCCCGGAACCAGCGGTTAGTAAGAATGTCAACTCAGATAGGGTCCATGTTAATGCCTCGCATCCGTCACGCACCCATCGCGAAACCAGAAGTGTCAGTGAAAATCTTGGCGTATCACAAGTTAAGCTTGTCCATTTTCTTTTAAGAATACTATGTTCCTATTACGGAAAGGACACGCCGAAGAAAAACCTTTTGGCCAAGAAGACCCATGTTAAGCAAACTATTGGCATTAGCATCCCTTCGGTTCAGATGGCTGATCTGCGAAAAGAAGACCAAGACCCAACCAAATTTACCCAAGGCGATGTACCTGTTTGTTCTGATGTCAACGAAGATCACTTGTTATGCCCTGAGGTCAAGGTCGATTATTTAAATGACGTTTACGAAGTTAATGACCGATTTATAGCTCTCGTAAGTCACGACATTCTGCCACCGTCACGCGACACCAACAATGTTTCAATTAATAGAAGTGTTTGTGATACTGAGGTCACGTTTTTAGTAGACACAGGCGCTAACGTCACTGCTATTAAAGCAGATATTTGGCGACAAATTCCACCCCCAACTAAACATCCTACATCTCAAACGACGATTAGTCACATTAAGTCGGTTAGCGGAGAGTCGATTCCAGTGTTAGGTCAAGTTGAAGTACCTTTCCACATTAATTCTAGAAGCTATCCTTTCAAGGCCTTGATAATTGAAGCTATGGCTTATGACGCAATACTAGGTCGCGATTTCCTAGAGTTTTATAAAGCGAAGATTGACTTCGAGCGGCGCACTTTAACCCTCGAAGGTGATTCCAGTACTTTCGATGAATTTGACCTAGAGACCAATACAAAACATTTGGAACCAGGGGTGTTCGCCGTGCATGCCCAGTCCTCATTTATAATTCCACCCTGCACCGAAATCATTGTACCAGGCGAACTGGATTCTAGCTGTGTAGTAGCATCAACTGCACTTTTACAGCCTCGACCCGAATTACCAAAACGTTACCAAATAATGGGAGCGGCGCAGTTGGTTAAGGTTTCTAATAACACTTTCATTCCAGTTAGACTACTAAATCCAACCTCCCAACCGATTCACATCTATCGTAGAACGAAACTGGCCGAAATCTCGTTAGTCGACCCAGAGATTGCCACTTATGAATTAGTAAGATCAGATCTCGAAGCGGAGGCAAATCGCGATATTCCTACTGCTGTGGATGCTGAACCCCGAGTACCCCTAGACGTCGGTAACGTTGGTTTGACCCAGACGCAACGAACTCGGCTTCAGGCCCTTCTCACGCGGTACGATGATATTTTTGCATACACGCCGGACCAATTGGGCAGATGTTCAGTTGTGAAACATCGAATCGACACTGGAAACCACCCTCCAGTTCGGCTTAGTGGACACCGAGTCTATGGTTACTCTCTTGTGGGTGAGCAGTGTTTTGATGTGCGACGCTATTTATCAACAGCGAATATCACTCTCAACTTCCTAGCTGGTGTCGATGGATTGAAGTATGGAAACGTTGTTCAACGTGCGTCGAACTCTATTGAATTTTTGAGATTTTTCACTGAAGCGTCACAAACAGTTGACCCAAATACCTTAAGGCCAGTTTTGGAGGTTGGAGACATTGTAGTGGTTGACAATTTCGCTACCCATCACGGTGATGCCGAAGTGGCTCTTCGCAGTTTTTTTAATGATGTGGCAATGGAACTCTTGTATTTGCCAACTTATTCTCCTGACCTCAACCCTGATGAAGAAGTTTTTTCAAAGCTGAAATACCTCTTGAAATACCAATATCAAGATATTGTGTTTGAAAATTTGGAATATGCTGCATGGTGTGCAGTCGGTGACCTAGAAGCTGCTGACATGTACGACTATTACCGCCACGCTGGATATTTGATATGACACGTAAACAACAAACGAATTCATGAGAGCAAAATAAAAATTTTTGTATTTGTTTACATAGATAAGTTTTTATTTTATATAGTAACATCAGAACTAACCAGATGATAGGACTGAACCAAATAAAGATAATCATGAAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan
PF00077	RVP	Retroviral aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR018061	Domain	Retropepsins	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan