Gene detail

Detailed information of asel_s0037.g86.t1 in Acropora selago

Genomic Location: sc0000037_pilon:1234878...1238484
NR annotation: XP_029187381.2, zinc finger C2HC domain-containing protein 1C-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0037.g86.t1

TGTTCAAACGATTTTCTTACTTCCCCATATTCGTTGGAAAAAGGAGACGGTTTATGTACTAAGAGGATAACCTTCCATGGCACAAGCCGTTTATAACAAGTCTCCAGTTAATCTGTTTCAAGGATACAGTACCAATGTGGAGCTTTCATCTCGAGCACATGCAACAATGAACGCTACATCAGCAAAGCTCTCACAAGTTGAATACAACGACATGAGTCATGGTAGAAATGGATCAAAAAAGCAGTTGTCTAGACTAGAACTACTCCGAGATGATTTCAACAAGAAACTTCAAATAGAACGCGAAGAGAAGATAAACAAATTGAGGCAAATTCAACAAGAAAATAGCATGAAGCAAAATAGAAGTGGAGGAACAGTGAGAGAGTTCTTTGAAGAGAGGAGAGCACTTGAAGCTACAAGGATTGGAAAAAAGAATCCTGAATTGCTACCTCCTATCCAGTCACATTTTGATAGTGTAAGAAAGCAAAAACGTAACATGTCTACACAAGGCCACTTCAGAAATGAACAACCATCAGCTAGCAAGAGAATTTCTTTAAAGGATCAATCTCAGATTCCACAACAATCTTTACTAAAGAAACCTACTACTACCACTAGAAACCATCCAAAACAATTTGGTGTGTCTATTTACAAGAGAACAAAGGGTATTGACAGACAAAACCCACTTCCCCCAGTTTACAAGACTGATTCTGGTGTGATAAAGAGAAAACCAGCTACACCCAATAAAAGATATGAGACACATTCTGTTCTATTACAAAATGATGCTGAAGAGGTTGAATCTTTGGATTCATCAATACCTATACCTTCTATTCAACAAAAGCCTATCACAAAACAAGCGCAAGGTCCAGTACAAGCTCAAAGGGTTAATAGTGACTGTGATGACTCACAGAGTATTATCACAGATCACAGTGACTTGCCCCCTAAGTTAAGCAAATTGAAGGAAAAGGTTCTCAGGCAAAGGGCATTGAGCAAACAGAAATTGAATATAGTAAATCATCAGCAAGACGAAAATGTGAAATTGACAGATTTCCAGAGGTGGCAAAAGGAACAAGACTTGGAAAGAAAACAGAGATTGCATAAAGTTAAAGAAAAAACAGAAAAGTCATCTTCTGAAGTCTCCCTCTCTCAAAGAGAGAAAGATCTTCTTTTGAAAATCCAGGAGGAGCAATTAAGGCTAGAAAACTTGACACAACAGAGAAAAGAGCTTGAAGAGCAAGAGAGGAGGCAACAGAAGGAAGATGAAAAGTGGTTGGCTCATAAGCAAAGTCTTGAAAAGTCTCTCTTACCACCAAAACCCTTGGAACCTACAAACGCTGTTCCCAAAAGGGTGACAGAGGCTAATCCTCACTCACCACTGACAGAACAGATTCCACTCACACAAACACAAGCAGACCACAATGATAGTGCTCTTGATAATGCCAAAAATAATTTCTATGCCGAGCAGACAGAGGGTATGGGAGAGGTAGCTGTGGATGTGACACCTTGCTCAATTTGTGGACGCAAGTTTGCTTCTGATAGACTGGTAAAACATGAGAAAGTGTGTGCAAAGGCTTCTACCTCAAAACGAAAGGTCTATGACACCAGAAAACACCGCAGCATGGGCACTGACCATGAGCAATATGTGGCAAGTGGTAAATATCTAGAAGAACCAAAGAAAAGGCCAAAGGCAGACTGGAGAGCACAACATGAAAATTTCATAAAGGCTATTCGGTATGCCAAAGGCTTGAGCGATGAACCACCTCCTCCTGCAGAAAACCCTGAATACATTCAGTGCCCACACTGTGAAAGAAGATTCAAACCTGCTACTGCTGAAAGACACATTCCCAAATGCAAGGACATCAAAGCTAAGCCTTCTCGTTTAAAAAAGAAAAGATGAGAACAATACTGAGAGCAAGAATATTTCCTTGCAATACTGCTGCAGATTTCTATCTTAATTATTTAAAAATTACAGGATCAATTCTCAGAACCTCTTGACAGACAGACATTATCTGCATTTTCTTGCAAAAACGTCTGTTCTTGAAGAATGCTAGAGGTGAAAAGAATAATAACATTTTATATGAAGAACATGTAAGCATTTTCCAATTAGGTAGAAAAGGAATATGCTAAGAAACAGATGTTATGCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CCG1	Zinc finger C2HC domain-containing protein 1C OS=Mus musculus OX=10090 GN=Zc2hc1c PE=2 SV=1
Q6AYP4	Zinc finger C2HC domain-containing protein 1C OS=Rattus norvegicus OX=10116 GN=Zc2hc1c PE=2 SV=1
Q9BGW4	Zinc finger C2HC domain-containing protein 1C OS=Macaca fascicularis OX=9541 GN=ZC2HC1C PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010465 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13913 all species →	zf-C2HC_2	zinc-finger of a C2HC-type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049899 all species →	Domain	Zinc finger, C2HC/C3H-type	Interproscan
IPR026104 all species →	Family	Zinc finger C2HC domain-containing protein 1C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14649 all species →	ZINC FINGER C2HC DOMAIN-CONTAINING PROTEIN 1C	Interproscan

Gene Ontology

No Gene Ontology signature was detected for asel_s0037.g86.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0037.g86.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0037.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

21TPM > 0

1Conditions

7.7Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	21	4.11	7.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.74
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	7.38
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	6.70
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	5.24
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	5.11
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	5.04
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.92
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.73
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.55
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.52
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.48
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.47
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.46
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.35
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	4.29
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.95
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.93
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.43
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.35
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	3.19
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	2.90
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.