Gene detail

Detailed information of asel_s0040.g86.t1 in Acropora selago

Genomic Location: sc0000040_pilon:1081404...1085311
NR annotation: XP_029211690.2, WASH complex subunit 1-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IG59	WASH complex subunit 1 OS=Danio rerio OX=7955 GN=washc1 PE=2 SV=2
Q28DN4	WASH complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=washc1 PE=2 SV=1
Q5U4A3	WASH complex subunit 1 OS=Xenopus laevis OX=8355 GN=washc1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009146 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11945 all species →	WASH_WAHD	WAHD domain of WASH complex	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028290 all species →	Family	WASH1	Interproscan
IPR021854 all species →	Domain	WASH1, WAHD domain	Interproscan
IPR003124 all species →	Domain	WH2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23331 all species →	CXYORF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0034314 all species →	Biological Process	Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0043014 all species →	Molecular Function	alpha-tubulin binding	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan
GO:0071203 all species →	Cellular Component	WASH complex	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18461	WASH1; WAS protein family homolog 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0040.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

21TPM > 0

1Conditions

66.7Max TPM

43.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	21	43.62	66.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	66.70
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	62.78
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	56.77
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	56.32
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	55.59
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	54.79
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	54.45
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	54.02
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	52.47
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	51.96
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	48.58
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	47.77
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	47.59
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	47.35
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	46.62
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	45.49
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	41.90
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	41.19
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	40.85
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	40.39
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	33.39
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.