Gene detail

Detailed information of asel_s0044.g15.t1 in Acropora selago

Genomic Location: sc0000044_pilon:166126...208316
NR annotation: XP_029193656.2, LOW QUALITY PROTEIN: protein MMS22-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

asel_s0044.g15.t1

ATGGACCAATGCTACAGGAGGTTCAATGATCTGCATCAAAGCTCGGTTGTTCCAGACCACGAAAACAGTTTTACACTATTTTTACGACTGGTGTCCGTTCATCTCACGAAATTGCTGCACAGCGGATCCCTTCAGGCGTGGAAGCAGATCAAAGGAAGATTCTACTCCAAGTTTCACAAACGCCGCATGGAGGAACTGAACAGCACTGGCCTTCATCAGTTTATCAGTCTCTTTCTCACTTTGTCGTGTGTGGCAGATCTCGAGGACGTGGCAAACAAGATGTGTTCGTTTCTTGACTTGTTAGACTTCAGCAAAATGCAGCAGGAGAAGAAAACTTGCATGTGGAAAGGCCTGTTTGCCTTGGTGCTTATTTACAAAGAAAAGAACGTAGACTTTGGTTATTTGGCGGAGAGATTGTCACAGAATTTTGCGGTTGTTTCAAGAGATTACACCGAGAGTTCCACTGGCGATAAAAATCATCACAAAAACAACTGGCAACTTATTACACTCTATTTGGACAGCGCACAAGATGTCTTTGAACATAAGAACAAACAAGACTTGTCGGAAAACAAACTTTTAGCCGATGGATTTCAATGTCTCTTTCGTTCCTGCCATGATAACGAACAGCGAGTTTTACTGACATTTGTTCAGACGTCTCTGACATCTTTAATGCAAAGCACAAGAAGAAAAAAGGAAGCGGCAGACCCTGCGAGTGGGATGTGGAAGTACATCTTCAGTCACGTGAGAGGCCTGGTGAATGACCCACAATGCATCCAGTACTTGTCCATTCCCCTGGCAGATACCCTCGCAACGTTCACTCTTGCAGCTTTGGAAAGGTACCCTGGGGAGGTCACAGGAGCCCCAGGATTGTCATTTGCAAAGCTTTTTCAAGAACTTGGAATTCCAGATGATATATCCGCCAGCTTTTGTTGTCGACTCCTGTGCCATATATTACCGTCCTCGGAGGCAATGTCGGCCATTGAAGCAGAACACTTAGAGGGATCTGTCATTCATGTCTGGTTCCGATGTCTTTTGCAGCTTCCTCCATCTCATGACGGTGTTGTTGAACTCTCAAGAGCCGTTGCTAAGCTACCGGAGATGAAAACCATATTAAGGAATCAGCCTGGATTTGGGACTGGAGAGAGCAGCGAAACGTCTCTTCAGCTTTTTATTGTCGGGCTTGGCCGACAATTTTCTCTTTTGACGGCCTTTGACGAGTCAATCCAGTTTCGAGAAAAGGTGCAAAAATACCTGGGCGACGTCATGAAGTATGTCGACAATGTGCTCAAGAATGCAGGACCTCCAGATCTTTTGAGGTTAGCGTATCACGTAGCTGGACTTCTAGCAAAGCACTGCTACAAAATTATTTACAGTAAGACCCAACCACGCTGTCTTTTCCCTCGACTGTTGGATCAATTCGCTCTACCGCTGCCCAATAGTAAGAGACCTGTGGCCCCACTGGTCATGCAATGTATCAAAAGCCATCTCCATCAGTTTCTTCAAGGTTTAGCTTGCTTGGACTTCAAACGCGACGAATTTATCCGGAGAAAGGTCAAGCAAGTATTTACGACTTATTTTCGCCTTTTCAGTCAGATGTTTCAATCGGCTTCGCAAGTATCCACTGTTTCGACCAAGAACCCCTTCATGGTTGTTTTAAAAGGTTCCTGTGTTTCCAGCCCGTCTGCAGAGAGCAGTGAATTCCGGCAGTTTACGATTGAGATCATCAGGGAGTCTTTTCTTCACTTGCCTCAGCCGCCCGCGAATCTGACAGCAACTCTGTTCTTCTTGGAGCAACTATTTAGGAAAACACTCTCGCCCTCTGAAACAGCGAGGAACGCTCCAGTGTTGTTGACGGCCATCACTGGTTGTTTGCTTGCGTGTAACCAATTCACACCTGGGAATGAACCCGCAGACATCAGGCGACAAGCATCTAGTATCTTGCAAATTATGCTTGGGGCTTGTAAGACTGAAATCAATTCAAGGTAA

Transcript

asel_s0044.g15.t1

CCCCATGTCTTACTGCAAATTTGTCCACTGCAAGTCGTTTTTAGAATGATGTCAAGAAATGAAGTACAATGTATTATACAGGTGTACAGAAGCCTTTGTTTTTGTTTTTTCCTACCACGAAACCGTCTTTTTCGTGACATTTTAGTTGCTGTACACACCGAAGTGTCGTTGGTGTTCCACCATATTTTCGTCCATAATCCAACACTTTCTACGTGTTTATAAGGTTTTTTACTGACGCATTCACTTACAGAGGCCCATGAGCCAAGGAATGGGAAGAAACCAGTGTTCTCTGTTGAGAACTGCTCCAGACCTGACTTGAAGACTTGATCGTCATTACTTGGAATGCTGTCCTTTCGGGAAAGAGTTCCAGAGGCCCAAGGTGGAGGGACGGGATTCGGGACGGACAGCCTAGGTAACTAGTGCGGTTTTGTTTCCTGAGTTCTCAGCTGGTGACCAGAACATTGTTTGAAAACTACCTGTATGAAAGTTAAAGGTTTTTTCAGTGTACAGTTCTTGCTTTATTTTTTTTCTCAACGGACACATACTTCTTGGCTTTAATTTTGTTGACACTCTTATCACATGCGGGGTACTGGGCCTCACCAAATGGCGGGGAATTAAGAATTAGTTTGAGTTGTTGCTCGCTTGCTGATTGAAGAAAAAATTGTAAATAAATGGAATTTCACCATTCGAGCTCTGGCAACGATTTGCAATATCTCTCAGAATGGGCTGATAGTTTAGATTTGGACGAATTTTGTGATCAAAGTGAAGTAAGAGATGAACCATCAGCGAAGAGACAGAAAACTGATCATGACAACCTGCAGGTTGAAACAGTTGAATTGATAATCAGAAATCCAGTGGAATTGAATTGCAGTGGCATTTTCATCTCCACCAGTGTGAAGGAAGTGCTGTGCCCAAACGGTTACCTAGCAAGTGGAGTTTTTAGCGTAATTCTACAAAATGAAAATCCTTACCCAAGGATCTTCGATGATCCAGTTATTCAGCTTTTTGGTGCAAAATTTGTGAAGGCAAATGCTCTGACGCAGCACATGGAAACACTATTCTTCTTGCTAAGGCAAGAAGTTTTCAAACTGGATAGTAGCACATGTATCACAATTTTGACAGATGATGTGCACTATCGTTCTCTTGAGCTACGAAGGAAATGCGGTAGATTTTTTGCCTTCCTGCTATACTTTGTGCACAACTATCTTGATACAGTTCAAGATTTGAATGCAAGGAATATCCATCTGGATCAAGTGCTTCTTCTGCCGTCGCGACTGACAAAACAGCTGGAAGAATTGGCGCTATTTCTTGGGCGGGTGTCATGTCTTCCCAGTTCGTACACCAGGACAAGCCCATTGTCTGTGGGCACATCTCTGCGATTGTCGACTGGGAATCATTTATTTCATCTTCATTTAGAACTCAACTGGGCCGCTATTGAGACACTTTGTCTGTTACTGGAAAAACAGGGTCAATGTAGTGAATTGTCACCCGATCGCTTCGTTGATGTCATAAATAGCATCAAGAAATACACGATGTCGTTTCTTTGGGACTTAATAGCTTTGACCACGCCCATTTACAACAAGGAATGTCAATCGGATTTACTAAGGGCAAGTCCATTTTCCTGCGGCTGTGTTCGCGAGATTTGGATCATGTTTGTTCATCTTATGGACCATTTGAGTGCTAAGACGGCTGTAGAGTCGTTCTGGTCAGCAGTTTCATCCATCATGTCTGAGATACTTCATCCCAAAGAAACGGAGGCAGACAGTCAAGAGTCTAGCTCCCAGGACTGCGCACGATCGTGTGCTCCGCCTGGTTTCACAGTAAGGACGCCTGTTGGTTTCTGTTGGTGGCTGTTGGCCCATCTGTCTCCTCTGTACTTGTTTACCAACAAAGGAGAGCACACGCAGAGGAGAAAGGGATGTGTCCCAGGTAACTGGGTTCTTGCTCAGGATTTACTTAAATCGTCTCTCCAAGGAAACAAGAATGATTCCTTTCACATCCCAGGCCAGTCTTTGAACAGCTTCGTCGTTGTTAGTCCTTCTGCTCTACAGTGGATGGACCAATGCTACAGGAGGTTCAATGATCTGCATCAAAGCTCGGTTGTTCCAGACCACGAAAACAGTTTTACACTATTTTTACGACTGGTGTCCGTTCATCTCACGAAATTGCTGCACAGCGGATCCCTTCAGGCGTGGAAGCAGATCAAAGGAAGATTCTACTCCAAGTTTCACAAACGCCGCATGGAGGAACTGAACAGCACTGGCCTTCATCAGTTTATCAGTCTCTTTCTCACTTTGTCGTGTGTGGCAGATCTCGAGGACGTGGCAAACAAGATGTGTTCGTTTCTTGACTTGTTAGACTTCAGCAAAATGCAGCAGGAGAAGAAAACTTGCATGTGGAAAGGCCTGTTTGCCTTGGTGCTTATTTACAAAGAAAAGAACGTAGACTTTGGTTATTTGGCGGAGAGATTGTCACAGAATTTTGCGGTTGTTTCAAGAGATTACACCGAGAGTTCCACTGGCGATAAAAATCATCACAAAAACAACTGGCAACTTATTACACTCTATTTGGACAGCGCACAAGATGTCTTTGAACATAAGAACAAACAAGACTTGTCGGAAAACAAACTTTTAGCCGATGGATTTCAATGTCTCTTTCGTTCCTGCCATGATAACGAACAGCGAGTTTTACTGACATTTGTTCAGACGTCTCTGACATCTTTAATGCAAAGCACAAGAAGAAAAAAGGAAGCGGCAGACCCTGCGAGTGGGATGTGGAAGTACATCTTCAGTCACGTGAGAGGCCTGGTGAATGACCCACAATGCATCCAGTACTTGTCCATTCCCCTGGCAGATACCCTCGCAACGTTCACTCTTGCAGCTTTGGAAAGGTACCCTGGGGAGGTCACAGGAGCCCCAGGATTGTCATTTGCAAAGCTTTTTCAAGAACTTGGAATTCCAGATGATATATCCGCCAGCTTTTGTTGTCGACTCCTGTGCCATATATTACCGTCCTCGGAGGCAATGTCGGCCATTGAAGCAGAACACTTAGAGGGATCTGTCATTCATGTCTGGTTCCGATGTCTTTTGCAGCTTCCTCCATCTCATGACGGTGTTGTTGAACTCTCAAGAGCCGTTGCTAAGCTACCGGAGATGAAAACCATATTAAGGAATCAGCCTGGATTTGGGACTGGAGAGAGCAGCGAAACGTCTCTTCAGCTTTTTATTGTCGGGCTTGGCCGACAATTTTCTCTTTTGACGGCCTTTGACGAGTCAATCCAGTTTCGAGAAAAGGTGCAAAAATACCTGGGCGACGTCATGAAGTATGTCGACAATGTGCTCAAGAATGCAGGACCTCCAGATCTTTTGAGGTTAGCGTATCACGTAGCTGGACTTCTAGCAAAGCACTGCTACAAAATTATTTACAGTAAGACCCAACCACGCTGTCTTTTCCCTCGACTGTTGGATCAATTCGCTCTACCGCTGCCCAATAGTAAGAGACCTGTGGCCCCACTGGTCATGCAATGTATCAAAAGCCATCTCCATCAGTTTCTTCAAGGTTTAGCTTGCTTGGACTTCAAACGCGACGAATTTATCCGGAGAAAGGTCAAGCAAGTATTTACGACTTATTTTCGCCTTTTCAGTCAGATGTTTCAATCGGCTTCGCAAGTATCCACTGTTTCGACCAAGAACCCCTTCATGGTTGTTTTAAAAGGTTCCTGTGTTTCCAGCCCGTCTGCAGAGAGCAGTGAATTCCGGCAGTTTACGATTGAGATCATCAGGGAGTCTTTTCTTCACTTGCCTCAGCCGCCCGCGAATCTGACAGCAACTCTGTTCTTCTTGGAGCAACTATTTAGGAAAACACTCTCGCCCTCTGAAACAGCGAGGAACGCTCCAGTGTTGTTGACGGCCATCACTGGTTGTTTGCTTGCGTGTAACCAATTCACACCTGGGAATGAACCCGCAGACATCAGGCGACAAGCATCTAGTATCTTGCAAATTATGCTTGGGGCTTGTAAGACTGAAATCAATTCAAGGTAAATTGCGGCCGATTTGAAGGCTTCGGTTAAAAATAAATCTTTGAAACTACT

Protein

Uniprot

Uniprot term	Description
E1C2Z0	Protein MMS22-like OS=Gallus gallus OX=9031 GN=MMS22L PE=3 SV=1
B3DIY3	Protein MMS22-like OS=Danio rerio OX=7955 GN=mms22l PE=2 SV=1
E1BGH8	Protein MMS22-like OS=Bos taurus OX=9913 GN=MMS22L PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14910	MMS22L_N	S-phase genomic integrity recombination mediator, N-terminal	Family	Interproscan
PF14911	MMS22L_C	S-phase genomic integrity recombination mediator, C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042320	Family	Protein MMS22-like	Interproscan
IPR029425	Domain	Protein MMS22-like, N-terminal	Interproscan
IPR029424	Domain	MMS22-like, C-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28547	PROTEIN MMS22-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0043596	Cellular Component	nuclear replication fork	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18423	CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter)	-	Chromosome and associated proteins	ko03036	deepkoala