Gene detail

Detailed information of asel_s0044.g22.t1 in Acropora selago

Genomic Location: sc0000044_pilon:255615...274985
NR annotation: XP_029193592.2, presequence protease, mitochondrial-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0044.g22.t1

ATGGTAATCCTTTCATCTCTGCTCGTCAGTGGACCAAACTCACCATTTTACCAGTCTCTCATAGAACCTAACATTGGCTCTGATTACTGTGCTGGTGTAGGATATGATAACAACACAAGAGATGCTTCTTTCACTGTTGGCCTGCAAGGAATCAAGAAGGAAGACTATCCAATGGTTGTGGAAACCATCCATAAAACATTTGACACGGTTATAGAGGAAGGTTTTCCACCTGAAAGAATAGAAGCGGCTTTACATACTATTGAACTGGGCACCAAGCACCAAAGCAGTAATTTTGGACTTGGGTTGATTATGAGTATAGCGTCCATGTGGAATCACGACGCAGATCCCTCGGATTTTCTTCCAATCAACGATCGGGTGCAACTATTTAAGGAAAAACTTGCCAGTGGCCCATTCCTTCAAGACAAAGTCAAAGAGTGTTTCAAGGACAACCCTCATTGCCTGACTCTGGTGATGAGTCCTGATCCAGAATATGAAAAAGACTTGAACAGAAAGGAGGAAGAGAAGTTAAGAAACAAAGTGAACGTGTTGTCTGAAGAAGATAAAACCATCATTTACAACAAAGGTCTTGAACTGGCTGAGAAGCAAAATACTCCGGAGGATTTGTCCTGCCTTCCAAAGATGATGCTCTCCGACATTGATCCTTCCTTGAAGCCAGTGAGTTTGGAGCACTATATTTCAGCTGGTGTTCCTGTGCAATACTGTGAACAGCCTACCAATGGTATAACTTATTTCCGAGCCATTTCCAGCATCAGTGATATTCCTGAAGACCTGAGAATTTACCTGCCTCTTTTCTGTTACATCCTCACCAGGATGGGTGCTGGAAATCTTGATCATCGAGAATTGCATCAGTTAATGAAACTGAGGACAGGAGCCATGTCACTGTCTACTCATGTCACAAATCACCACAGTGAAATGAATGCATTCGAACAGGGTCTTGAATTTTCCTCTCACTGCCTTGACAAGAACCTTCCTCATATGTTTTACTTGTGGGGGGAGATATTTGCCAGACCTAATCTCAGTGATACGAATCTCCTTCGTACACTGGTGAACTTGCTGGCTTCAGATCTTGCCATGTCAATCAGTCAGTCAGGACACCTGTATGCAACGATGATGGCATGTAGTTCTTTGTCTCCCGCTTCTCACCTTGTTGAACAATTCGGTGGAATCTCGCAGGTCTTGTTCATGAAAAGCTTGGCTGAAATGGAAGATTTGACCCCAGTGGTTGAGAAACTCGGCACCATAGCAGTGGAAGTTTTGGAGGGAACACAATTCAGGTGCTCTGTGAACTCTACAGCTGAAGGCCGTGAGGCGGTGGAAACTGCTCTGGAGGGCTTTTGTGATTCTCTGCCCAGCAGCCGTTTGGAGGAGTCATCTCATGTAAAGATACCCGACTACAAGGCTGAAGGTGTCAAGACACACTTTCAGGTGCCTTTTCCGGTAAATTACATCAGCAGATGCCTTCTCACTGTGCCCTACACTCATCAAGACTTTCCCAAGTTGCGAATCTTGGCCAACTTGATGTCGGCGAAATTTCTGCACCGTGAAATCAGAGAGAAAGGTGGAGCCTACGGTAGTGGTGCAAAAATAAGCGGCGGTATCTTTAGTTTTTATTCTTACAGAGATCCCCATTTCCAGGAAACTTTGTCAGCGTTTGAGAATTCCATTCAGTGGGCTGCTGAGGGAAAGTTTACGGACCAAGACATTGAGGAGGCTAAGATAACTTGTTTAGCACAAATTGGCAGACCAGTGTCGCCCGGTAATCAAGGAATGGTCTACTTCACTCAAGGTTTAACCGATGAGATGCGCCAAACACAGAAAGATCGCCTGTTCAGTGTGACCAGGGAGGACCTCATTCACGTGGCTCGCACGTACCTGGCCAATCAAAGTATCGCAAACTCAATTGCTGTGCTCGGACCTGAGAACAAAATAACTGCCAATGACAGCTCATGGATAGTGAGAAGAGAGAACCTGAGTTAA

Transcript

asel_s0044.g22.t1

ATAAAATGTGGAAAATATCGGTAGCTTGCGCGCGCTTCTAGAGATTTTTACAGGAAAATGTGGAGAGCCAACTTGCCTCTCATATCACAGCAATGGAATCGTTTAATATCACGACAACGGGATGTTTCCAGACGCTATCTCTCTGTGATCACAGAGGAAAAGAAGCCAAATTGTTTGGAAGCTGCCAGTCATTTCAAGCCTGGAGACAGAATTCATGGCTATACAGTGAATAAGGTTTTATCTGTCCCTGAGCTGTTCCTAGTTTCTGTTCAACTAACTCATGACAATACAGGAGCGCAACATTTACACATATCCAGAGATGATTCCAACAATGTTTTCTGTGTTGGATTTCGTACAACTCCTATGGACAGCACCGGTGTGTCACACATTCTAGAACACACTGTCCTTTGTGGCTCACGAAGATTCCCTGTCCGAGACCCTTTCTTTAAGATGCTGAATCGATCTCTTTCCACCTTCATGAATGCTTTTACAGCCAGTGATTTTACCATGTATCCTTTTGCAACACAAAATGCCAAAGACTTTGAAAACTTGCTCTCTGTTTATTTGGATGCTGCCTTCTTCCCACAACTCAGAGAACAAGACTTTAGGCAGGAAGGTTGGCGTTTGGAACCTGAGGACCTCTCTGACCCTACCTCTCATATCACTTTCAAAGGAGTAGTATTCAATGAAATGAAAGGTGCTATGTCCAGTGCAGAGTCGCTATTTCTTCAGCATGCTCAGAAGAACTTGCTACCCAGTCATACATATAGTAATAACAGTGGTGGAGATCCACTTTGTATCCCTGACCTCACGTGGCAGCAGTTGAAGGATTTTCATTCTTCACACTATCATCCAAGTAACTCAAGATTTTACACTTATGGAGATTTGCCATTAGAATGTCACTTAGAACAAATTGAAAACAAGGTTTTGCATCACTTTGACAAGATTTCTGTGTCAACTGGTATTCCTCCAGAACCTCGCTGGTCACAACCTCGAGAGACTTTCGTAACTTGTCCTGTGGATCCAATGGCACCTAACCCTGACAAACAAAGTGCAGTTGGGTTGCATTATTTGACAGGGAGCAACACCACAGATGCTTTTGAGAATCTTACCATGGTAATCCTTTCATCTCTGCTCGTCAGTGGACCAAACTCACCATTTTACCAGTCTCTCATAGAACCTAACATTGGCTCTGATTACTGTGCTGGTGTAGGATATGATAACAACACAAGAGATGCTTCTTTCACTGTTGGCCTGCAAGGAATCAAGAAGGAAGACTATCCAATGGTTGTGGAAACCATCCATAAAACATTTGACACGGTTATAGAGGAAGGTTTTCCACCTGAAAGAATAGAAGCGGCTTTACATACTATTGAACTGGGCACCAAGCACCAAAGCAGTAATTTTGGACTTGGGTTGATTATGAGTATAGCGTCCATGTGGAATCACGACGCAGATCCCTCGGATTTTCTTCCAATCAACGATCGGGTGCAACTATTTAAGGAAAAACTTGCCAGTGGCCCATTCCTTCAAGACAAAGTCAAAGAGTGTTTCAAGGACAACCCTCATTGCCTGACTCTGGTGATGAGTCCTGATCCAGAATATGAAAAAGACTTGAACAGAAAGGAGGAAGAGAAGTTAAGAAACAAAGTGAACGTGTTGTCTGAAGAAGATAAAACCATCATTTACAACAAAGGTCTTGAACTGGCTGAGAAGCAAAATACTCCGGAGGATTTGTCCTGCCTTCCAAAGATGATGCTCTCCGACATTGATCCTTCCTTGAAGCCAGTGAGTTTGGAGCACTATATTTCAGCTGGTGTTCCTGTGCAATACTGTGAACAGCCTACCAATGGTATAACTTATTTCCGAGCCATTTCCAGCATCAGTGATATTCCTGAAGACCTGAGAATTTACCTGCCTCTTTTCTGTTACATCCTCACCAGGATGGGTGCTGGAAATCTTGATCATCGAGAATTGCATCAGTTAATGAAACTGAGGACAGGAGCCATGTCACTGTCTACTCATGTCACAAATCACCACAGTGAAATGAATGCATTCGAACAGGGTCTTGAATTTTCCTCTCACTGCCTTGACAAGAACCTTCCTCATATGTTTTACTTGTGGGGGGAGATATTTGCCAGACCTAATCTCAGTGATACGAATCTCCTTCGTACACTGGTGAACTTGCTGGCTTCAGATCTTGCCATGTCAATCAGTCAGTCAGGACACCTGTATGCAACGATGATGGCATGTAGTTCTTTGTCTCCCGCTTCTCACCTTGTTGAACAATTCGGTGGAATCTCGCAGGTCTTGTTCATGAAAAGCTTGGCTGAAATGGAAGATTTGACCCCAGTGGTTGAGAAACTCGGCACCATAGCAGTGGAAGTTTTGGAGGGAACACAATTCAGGTGCTCTGTGAACTCTACAGCTGAAGGCCGTGAGGCGGTGGAAACTGCTCTGGAGGGCTTTTGTGATTCTCTGCCCAGCAGCCGTTTGGAGGAGTCATCTCATGTAAAGATACCCGACTACAAGGCTGAAGGTGTCAAGACACACTTTCAGGTGCCTTTTCCGGTAAATTACATCAGCAGATGCCTTCTCACTGTGCCCTACACTCATCAAGACTTTCCCAAGTTGCGAATCTTGGCCAACTTGATGTCGGCGAAATTTCTGCACCGTGAAATCAGAGAGAAAGGTGGAGCCTACGGTAGTGGTGCAAAAATAAGCGGCGGTATCTTTAGTTTTTATTCTTACAGAGATCCCCATTTCCAGGAAACTTTGTCAGCGTTTGAGAATTCCATTCAGTGGGCTGCTGAGGGAAAGTTTACGGACCAAGACATTGAGGAGGCTAAGATAACTTGTTTAGCACAAATTGGCAGACCAGTGTCGCCCGGTAATCAAGGAATGGTCTACTTCACTCAAGGTTTAACCGATGAGATGCGCCAAACACAGAAAGATCGCCTGTTCAGTGTGACCAGGGAGGACCTCATTCACGTGGCTCGCACGTACCTGGCCAATCAAAGTATCGCAAACTCAATTGCTGTGCTCGGACCTGAGAACAAAATAACTGCCAATGACAGCTCATGGATAGTGAGAAGAGAGAACCTGAGTTAATTTCGCTGGCTTCGGTTGATACGATCCTGTCTCGAAGAAAAGGTACCTAGATTTCCGCCTGGTCAATGCCTTTGAAGGGAATTCGCCAAAGATCGTGTGTAGGACTGTCAATACGATCAAGCTAACTTCATCCATTTTGGCAACTGAAGTCACTCTCTCGTTTGCGTTTCACCATTTCTTCGTAAAAAAAAAAACTACTTCTCTAATGACTCAATGGGCTTGACAATAATAGTGACGATAAACAGATTGCCTAGTcagtggtctcctttctaggcggtaaccggtaaaatttattgtctctaacatcacctatggtctctttaagtggccaggaattgttggaaattcaactggtgaaaggaaaagaattaatgtactttcgtttgaccaaaccctgatccttgtgttcacaaagaagtaagggtacaagtacatggcagcgtatatgaagtgggttataatgaggtcaatttctattccatatattgcactgagcatacaACGCTTTTCAAAACATTTTGCGTTTTTCCAAAATGGCTTATTATAAGAAGAATCTGTAGTTTTGGTCGGCACGTTCTCAGAAATCGTACAAAAAATATCGAGTTTTCATGGACAAAATTTTAAAACCAATGAAGATACTTATTTATTTCTGCAATGATAAAAGAGTATAGTCTATGTTAGTAATATGGGTTGAATATGTTTGTTCTTAAACCCTATGCATTTCTACTGCCTACATAAATAGGTGGTGCAGAAATTCTacatgaaaagcaatgatgctcacaagtgctctaccagtttgaaaaactcttaattgttttgctgataaaaggACAGTTTAAAACACCACCTATCGGCTGCTACAAGTTCCCGTTATCTAAGAGAATTTAATTTGAAGTTGTGGCTCTCTTTGCTTGTTTGGTTATGCCTAAGACTTTTTTGCCTAATAATGGTTTGGCCTCCGCCttcttaaataagacaatggtttgaac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5JRX3	Presequence protease, mitochondrial OS=Homo sapiens OX=9606 GN=PITRM1 PE=1 SV=3
Q5RDG3	Presequence protease, mitochondrial OS=Pongo abelii OX=9601 GN=PITRM1 PE=2 SV=1
Q7ZVZ6	Presequence protease, mitochondrial OS=Danio rerio OX=7955 GN=pitrm1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003537 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05193 all species →	Peptidase_M16_C	Peptidase M16 inactive domain	Domain	Interproscan
PF08367 all species →	M16C_assoc	Peptidase M16C associated	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011249 all species →	Homologous_superfamily	Metalloenzyme, LuxS/M16 peptidase-like	Interproscan
IPR007863 all species →	Domain	Peptidase M16, C-terminal	Interproscan
IPR013578 all species →	Domain	Peptidase M16C associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43016 all species →	PRESEQUENCE PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0016485 all species →	Biological Process	protein processing	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0044.g22.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.