Gene detail

Detailed information of asel_s0046.g64.t1 in Acropora selago

Genomic Location: sc0000046_pilon:1064909...1075325
NR annotation: XP_029210961.2, autophagy-related protein 13-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0046.g64.t1

CTAATCCTCCTCTCTCCTCTTGGGACTGTAGCATTGAGAAGACTGGCACTGCAAACAAGAAATGTTTAATGGCGGCTGATGTTGACGAAAAACGGGTGGCAACAGCGTTGGTTTAGAGCTTCAAAACTATTTTCACGCTCCGTTTTTTGTACTAATCATACTTGTATCAATGGTGGAGATGGCAGAGAAATTTAAGAATCGAGAAGATCAAGAAGAACGTGATCTCAAGAAATATTTAAAATTTTTGTCATTGAAGGCTATTCAAGTAATCGTTCAGTCCCGTCTTGGTGAGAAGATCCATACAAAGTCCAAGCCAAATTCGATGGGCCAAGACTGGTTCAACCTTGCAATAAATGATGATCCAGATGTTTCTGCTGAAGCAAAGAAAGTCACTAGTGGAAAGCTTCCTTCACAAGAAAGCCCAATGTGTGTTGAAATATCTCTAAAAACCAGTGAGGATGAATCAATGGTGTTGGAGACTTGGTGTCTTGGTATCAATGATCGAGTTGATTCAAATACAAAAGTGACATACACATTTTACAACAGGATTGGATTGCTGCTCAAATCTCTAGTGTCAGTCACAAGAGTAACTCCTGCCTATCAACTTTCACGAAAACAAGGGAAAGACTTCATGATGTGCTACAAGGTGTATTTTGGTGAGGTCCGGTTCAAGGAGTTGGGAGAAGGTTTTCAAAGTTTGAGGGTTGGTTCAATTGGTACCCCTATAGGATCCATTACTTTGTCTGCAGCATACAGAACGAAGCTGACCCTGCCAGTGAGACCGCAAATCATGGTCAAGAGTGACCACTTTAAATCTGAACCGGCCCGTGTATCATGTGATCCGCTGAGTGGAGTTTTACAGTGTGTGAGTGGCGCACAGGGAGCCTTTGATTTGACTGCTGAAGCAAGACATCATATTGCTGAGCAGATAGCCAGTGCAACTGAAACGGAAGTAACCCAGTCCTCTACAAAGTCCTCCAACACCCCGCCATCCTCATCCCATCGGCTGAGTTCAGCTTCTCCTTCACCGCCCTTCACCAGGCGGCTGTTACAGGAAAAAAACGCCATTGGCAAACAGGACGTTGAATGGTCAGCAGGTTCCAGCAAACCCTTAAATTGGAAGCAAATGAAATCAAAGGGGGCTTTTGTAAGTGAAACCGACACTCCTGTAAAACCCTTCCTTCCGAATCTGTCTTCGAGTCCGCCTTTTGCTTCTCTTTTGCGTCGCAAAGATGACGAATCAATCGGCTTGCCTTCAGAGAACACCCTCGTGAATTCGCTACCCGGGCTTAAAAGAAAGGATAGCTCGTCAGAAAGGACAGAAAGGAGACCGTCCGCAACCCCCGCAATGCCTCAAGCTCCCAGTCAGCTGGGATGGGACGATGACTTTGTTATGGTTGAGCTGAAACCGGCTTTTGCGTCTCATTCAGGGAGTTCTACTGGAGATCTGGGAAGCTTCTTCCGTGAGTGTCAAACTGCTCCGCCATTGAGCCTGTTCCAGGACACCGAGATAGCGACCATGGACAATGTTATGGATCAGTTGGATGGCGAACTTTGTGGTTTCCGTGAAAACGCCTCAAAATTTGATGAACTTTTAACAGATCTACAACAGGCCTGATTTTGCAAGCCGAAATGTTTTTTCCTAAAAAGACCAAGTGAAGGCAGATGTATTTAATAATCCAGTTTCTTTTCGCTGTCTTTATCGGTTGCTCCTAGATACACGTGGATATTGTCTTCCTTAAATCCATGCTCTTTAAATGTAATTTGTGCTCTGCTGCTGACGTATTCGCAAGGTCCACTTAAACCAATTTAATCCTGAGCTCGTGGTGTTTGAACCTTTACCAGCTGCGCATGCTCGCATGAGTCAATGGTTAACATTTTAAAACTGCCAGTTTTGAATGTGTGCACAAAATTTGTCATAAATTGAATTTTTACTGTTTACCTTCACATTCAATTTTTATTCGCGGATTACAAATATGGATGCTGGGCGGCTGCTTATGGCTTAGTCAGTGAATCTGGAGTGTTTAGACTTTTCATTCTTCTTCGTTCCCGTTTTCACGACGTAGGGGAGAAAGTTTTGTTTTCCTTCAGCGGCCGTAGTCGACTGCCAATTCTCATGAAGATTTATCATAAACTCCGGTAACTAGCTGCGTcaggagcggatgtgtaagagcatgcaactaagcctatgtcacggcatttttacggactgatctatttttagtaaaccttctcttttgtgaaagaaaggcagttccggcgcagtgacgtcaattagtttcttgtgattggtcatggcactcccaagggagtctcattccaggaaaattagatctaaacataaacgccgcgacaggaatatagtggagttgcatgcgcatgctcatcagctccAGCTGTATGCAGTTTCTTtgactgcatggagtgcaataaataatgaatgagaacagaatgaataatgaTATCATCCAGTAAAAAAATACCTTCGCTTTAAATTAGCCTCTTTAAATGATGCTCCAGCCGGTTTCATGTTAGGATTTCGCACAATTTTTAGTGCAAACAATGGCGGAACAAAATGTTTATCTAATTAAATTCGAATTTAGTATTGGATTGCTCTTTGGTTTAAGAAATCAAGTTGAATGTGATAAAATTGCATGGAGAATCGGAATTCTTTTCTTGGGAGAGAGTATGGAAAATCTCGTGACATAGATAGATAAGGTAACCACGCAGTCTTCAATCGTAAATATAATCATCTCTTTATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7SYE0	Autophagy-related protein 13 OS=Danio rerio OX=7955 GN=atg13 PE=2 SV=1
Q08DY8	Autophagy-related protein 13 OS=Bos taurus OX=9913 GN=ATG13 PE=2 SV=1
A5A6N3	Autophagy-related protein 13 OS=Pan troglodytes OX=9598 GN=ATG13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007584 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10033 all species →	ATG13	Autophagy-related protein 13	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036570 all species →	Homologous_superfamily	HORMA domain superfamily	Interproscan
IPR040182 all species →	Family	Autophagy-related protein 13	Interproscan
IPR018731 all species →	Domain	Autophagy-related protein 13, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13430 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000423 all species →	Biological Process	mitophagy	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034497 all species →	Biological Process	protein localization to phagophore assembly site	Interproscan
GO:0034727 all species →	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:1990316 all species →	Cellular Component	Atg1/ULK1 kinase complex	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08331	ATG13; autophagy-related protein 13	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.