Gene detail

Detailed information of asel_s0050.g86.t1 in Acropora selago

Genomic Location: sc0000050_pilon:1052259...1054763
NR annotation: XP_029199854.2, uncharacterized protein LOC114964651 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0050.g86.t1

GGAAGGCAAATGCTGAACAGTTCAGGGGAACCTTTAGTGGGAGAATTTCAGTAATTTAGCTTGATGGTTTAACATATTTCCAAGGCCCTTTGTCATTAGCTAGTTAGACTCGTTCTATGTCATGGAAGGAGACGGATACCAATGCAACAAACACGAAACACTAGAGGACCTACTTGAGTTTTATAAGAAAGCGGCTTCCAATTATGATAAGGATGTTAAGGAGCATCGCGGATACATTGGACATGAAACTTCAGTGGAAGTGTTTGTGAGAACCTTAAAACAATACAATTTCTCAGGAGATGAAATGATCTTAGATGTTGGAGCTGGGACAGGACTTGTTGGAGAGGAGCTTTCTAAAAGGAACTTTACCAACATTGATGCTTTGGATGCATCTGAAGAGCTCCTGGGTGAAGCAAAAAAGAAGGGAATTTATAAGAAACATTTTGTGGATGTGTTAGGTCCTGAAAAGCATTTAAACTTACAGGATAACTATTATGATGCTGCTATTGCAGTTGGTGTATTCACCTTGAATCATGTCAAGGCTGAGGGAGCCATGGATGAAATGGCACGAGTTGTGCGACCAAGTGGTTTTGTCTGTTTCTCCATTAGGGAAGATGTCTTGTTTGAAGAGAAATATGGCTACCAGGAGAAAATGAACCAGTTATGTAAACAACAGGTCTGGAAGCTTGTTTCCCAAACTAAGGAACAGTACCATAACAAGAATGATTTCTTGAAGTGTTTTTTGTACATTTATCAAGTTTTGTAGACATTGGAGAGTGATGCAGACTTTTAACAGTAGTATGAAAACAGCTTAGAAGATAAAAGCACAAGTTGAAACATGGTGGTAGATTTAAATTCAAAAGAAAAAAAGGATTCTGGATTTCAAAGTCAAGACATCCATTGTTTAAAGACCCAAACCTTGTTGCTCCAATTCAAAGACAATAATCCTACCTCTATGTATGTAACAAAGCTTTTCATAGCTAGGAAATTCATGTTGCTTTTTCTTATTTGTAAAAAACATGCTTCCTGACCACATTTCTGGAGCTGAAACTTTTCAGAACTTTTGAGGAAGAAAACTATATTTCTAGACAATAAAATGTTCAGGGTTCTATAAGTTGGATTATGTTTCTTGGATGGGGGTGATCTTCACTGTATTCTAACCCATAACATGTTAAAGAGGGTATTTTGCTAAACTGCAGAATACCTTGCCACTGATATGCTCATCATTTAATcagtgttctccctaagtattagttcagcaggtagggacaattcctgactggtattttttaaaacaacctatatagttttggtaaacaaagaggttgtgggcagtaagaactgctgcttgaagtggtaaattttagctgttacccctcataacgagaacactgTTAATAGAATAATAATAAttagtatttaccgaatcagtggatagcaattttcgcgcattttgattggcttccgtaactcggaatatcttgggatattcactgtttttcaaatggagagaaaaatggcgcattgtttcacgaaagtttcagaagaaattgaggaagcgctttttttacccatctgatttggtaaatactaaaacagctatgcccctcagggtcaatgaagagcagtggatatatacctcgacgcttcgcgtctcggtatatatccaccactattcaacctcccttcgggagatatttgtatattattATAAAGAATTGCAAATGATAATCATCATCATTGACATAAAAAAATGTAACCAGATGCAAAATAAGTACATCCACCACTTTCAGTAACATTtttcatagtaacattaggaagcttaagcacacaatgtcattgaagcatagagggcacctggaagagggctgtttgagttaacatgtcttcatattatcacatttataatataatggtaggcatcttttcactggtatagatgattagttggaaaatctgggagagatcactgtccttgaatagaaatgtactaacttcgattttcgtccatggctcaaaaactggccatggttaagctctctattgtcACAAGACTGTGACTCAAAGCTGTGGAAGTAATTACTTAATTAAAAGACAAAAACTGTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000263 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08241 all species →	Methyltransf_11	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013216 all species →	Domain	Methyltransferase type 11	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43591 all species →	METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24419	METTL27; methyltransferase-like protein 27	EC:2.1.1.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0050.g86.t1 across 24 RNA-seq samples of Acropora selago. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

23TPM > 0

1Conditions

41.6Max TPM

24.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	23	24.84	41.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987	41.57
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987	37.25
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987	36.19
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987	35.31
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987	35.05
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987	32.98
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987	32.76
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987	32.31
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987	27.29
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987	26.61
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987	25.92
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987	24.87
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987	21.53
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987	21.18
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987	20.34
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987	20.23
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987	19.64
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987	19.28
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987	19.04
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987	18.17
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987	17.50
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987	16.26
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987	14.82
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987	0.00

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.