Gene detail

Detailed information of asel_s0059.g37.t1 in Acropora selago

Genomic Location: sc0000059_pilon:458325...475323
NR annotation: XP_044182722.1, LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase gamma-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0059.g37.t1

ATGTACTCGTTCTTCTCTGTATAGTGTTGTTTGTTTTAGCTTTCGCAGTTGTCGTTGGAGTCATGCTTCTATACAGAAGACGGCTCCACTGTTGTTGTAAGGCCTACTGTAATGGTTTCTTTAGCGTGCAGGCTGATAATCCGCCGTCAACTCCAAGGCGACGGACGAGCCTTCTTAGTGTTACAAAATTAAAGCATGGGGTCATTCAAGTGGATGAGTTTATTCATCATGTAAGAATTTTACACACTGACGGAGACTACAGATTCAACCAGGAGTTTGAGTCACTGAAAAATGTTCACGTGAAATGTCGCTCGTGGACTCATAGCGATCACCCAGAAAACCAAGCGAAAAACAGATATGGGAATATAGTTGCATACGACCACTCGAGAGTAGTTCTTTCGCCCTTGGAAAACGACCCCGAGTCTCACTATATTAATGCAAATTACGTGGATAGTTTTAAGAAAACGAATGCCTACATAGCAACTCAAGGACCCCAGCCCCAGACCATTATCGATTTTTGGCGAATGGTTTGGGAGCAGAATTGTACGATTGTCGTTATGATTACCAAGACCATCGAAAAAGGCCGGCGCAAGTGTGAGATGTACTGGCCCACAAATGAAGCGAGAAGCGCAGTGCGTGGGCCACTAAGAATTACTTACCTGGACGAAGAAGCGTTCGCTTTTTACACTGTGCGGAGGTTTGAAGTGAAACCAGTGGATCAGAAAAGTCACTACTGTCAGGATATGGCTGAAGATGAAGTCAAACCGATGATTGTGTCCCAGTATCATTTCACTGGCTGGCCGGATCACGGCGCTCCAGACACTGGCTGTGAATATCCTGCGCTAAGCTTCATCCTGAAGTCAGCTAGTGCAAGTCAAGATGGGGCGGGCCCTATCATTGTACACTGCAGTGCTGGTGTGGGTCGAAGCGGTGCTTACATTGTTATTCATAGCATGGTGAAAAGGATCCATGATTCTGGAGATGTAAACGTGTACGACTTCCTGTCGCATATTCGCCAACAAAGAAACCATCTTGTACAAGAAGAGTGTCAGTACATATTTGTTCACGATGCATTGCTTCATTACATCGAAAGCGGTTTTAGGTTAGCTATTCCCATTGATGATCTCAAAGATTATGTCCACAAACTGGAGAAGAATCGCTCCACACTGGATATCGAAATTCAGCGGTTAAAGGAAATCGAAGTCAAGCATTACAATCTGAAGCAGGCAAGACGAGGCTGCAACATTGCGAAAAACAGATCCGTGGATTTTATACCAGCTGATAGTGCGAGAGTGGAACTCTACCCTCGTCCAAGGGAAGAAGGATCAGATTATATCAATGCAAGTTACCTTCCGGGCTTTTGGAAGTCGCAGGCTTTCATCGCCACGCAGTATCCTTTAGAAGACACCACAAATGACTTCTGGAGGATGATTTGGCAGGAAAATTGTCGCTCCATTGTAATGTTGATCAGTAAAGCGGAACTTGAACTTGACTACTATCACAGTTATCTACCGGCTGAGCATGAACGAAGCAGGTTTGGTGAATATGAAGTGACATTAGATTCTGTGCAAACACGGGGCGACGTTGTGGTCAGGGAGATGAAAATGGCTTCTATCAAGGATCCGAGCGAGCACAGAAATATTCGACATTTTCATTTCCTTCATTGGCCAGAGATGGGTAACCCTGGGTCTGGACAAACTATTCTTCAGCTAGTTGATAAAGTGGACAGCTGGGAGAAAGAGGTCGCAGAAAGCGCAAATCCAAGTGAAGTCATTGGATCCATCGTGGTACACTGCAACTATGGCATTGGTCGGACCGGTGTGTATTGTATATTGCATGCCATGTTTCAGCAGATTGCTCGTGAGAAAACTGTATCCGTCTTTCAACTGGCTCGCTTGTACAATCACCTGAGACCTCACTGCATATCAGACAAGGTGCTTTACGAGTTCTGTTACAGTACATTGATCGAGTACATCGAGGCTGACTGTTCGTTACATCTGGTGTGACGATACTCGCTGTACGTGACATTTACCAAGCACTGGGTCTTAGACACTCTATGGTGGCAACGTCTGAGTTTTTGAGAAAAACGATGGTAATGAGAAGCGGTTGGTCACCCATGTCATGCGAGGAATTTCTTGACCTTGTCACGCAGTTGTAGCTACAATAGATCTCTAGACTATCTTCTAGAAGAGTGGACCAGAGCCACTTAAAtccagggatgcacgtaattagatgtaagctcaattttgatacacttcgcaaagtTTAAACTACCTTTTTATATcttttgcgttgacatttgtgttagggttattttacaggtcagaggtcagaatttgcttactgtttttgtcttctcaaggagaacagttttgaggaaaccttatgacatataatgtccgtTCATCACACTGATGTTTATTGAAATGTAATCGGCTTGGAGCTAGTACGTGCATTTCTTGACGCATCTCACCGACTCATGCAGGGGTTACTCTTAGGTACAACACTAAGATAGGTAGCAATGCGATAAAAGAAAAGGTAGCGTATTGTTGGCTGTAAAGACCGTTTTAACTATAGTTTGGTAGAGAAAAGAGATATTCTTATAACTTTTTGTACTATAATAATTTCTTCGTGAAGTAAATATGTACTTAGTTAGTTTTGGAACGATAATAACTTGATCGCTTAGTTACGAAGAAGTTGTCTTGAGAAATTTGGAGTCTTCTTCAAGGAGATTTTAATCAACAGCCTTCTTTTGTGCCAGATTTTAATTTAATCGTTGGTTGTTTTTGTAAATTTACATTTCTGCGTGATAGTTCTTTGAAAAGGAATGACGATTGTCACGTTAGTTGCCAACGGTGTTTTTACGGCATCAGTCCAACTGTCAAAGGGTCTTGCGTTATGGTGCGTGTACGTGAGAAAACGCGTAAATTTTGCACGTGCAGAAGTTTCCAGAATTAGAATAGTTTTCTTTTTAAATTTGAGATGCTGCGGTTCTCTCCGCTAAGATTTGGTTTTCGTAGAGACAGTATAGCAAGGAATTCACAGTTTTTTTGTATGTCAAGATTTAAGACTAACTCACCTTTGATGTTGTTTTTTTTTTTCTTTTTATCCTCAAGTTACAAATCGATGAATAGATACTGCTAGGATTTTCACACGCGTACAGTAAGATTACAATGAAGATGCTGGGGCTTAGTCCAGTTGGAAGAATTAGAACGATTTGCCGCCCTGAGCTTTCTCCGTTTTCTAAGACCTCTATACATGTCAATTTCGGAAAACCTCCGTTCTCTTGGGTTCGGAAAGGCTGCATGCTCTTGGCATTCGGAAAACTTCCGCTCCTTGGAGTTCGGAAGGGCTTCGTGAAAACTTCCGCACGCCAAGGCCTTCCGCTTCTTCTTCGGAGAGGCTTCGTCCGTGTTCGGCGTCCTAGGGGTCGAGTATTCAGTGTATTGTACGTTATTCCAGCTTGAGAACCACTGAATATATTTAAGAGTGATATTTTAATTTTGAAAGTGTAAACTTATTTTTTGTTGTATATTGATCATCGTGTACATAGTCAAATGATTGCATGCGTTTATTGTTACAAATGTCTAATACAATATCGATTAAAATAAAAGTTAATTGATTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23470	Receptor-type tyrosine-protein phosphatase gamma OS=Homo sapiens OX=9606 GN=PTPRG PE=1 SV=4
Q64487	Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3
Q05909	Receptor-type tyrosine-protein phosphatase gamma OS=Mus musculus OX=10090 GN=Ptprg PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000057 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR050348 all species →	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134 all species →	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0059.g37.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.