Detailed information of asel_s0060.g51.t2 in Acropora selago

Genomic Location: sc0000060_pilon:505373...544212
NR annotation: XP_044173608.1, otoferlin-like isoform X6 [Acropora millepora]
Species Acropora selago · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5SPC5Otoferlin OS=Danio rerio OX=7955 GN=otof PE=3 SV=1
Q9ERC5Otoferlin OS=Rattus norvegicus OX=10116 GN=Otof PE=1 SV=2
Q9HC10Otoferlin OS=Homo sapiens OX=9606 GN=OTOF PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000314 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08151
all species →
FerIFerI (NUC094) domainDomainInterproscan
PF00168
all species →
C2C2 domainDomainInterproscan
PF16165
all species →
Ferlin_CFerlin C-terminusFamilyInterproscan
PF08150
all species →
FerBFerB (NUC096) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035892
all species →
Homologous_superfamilyC2 domain superfamilyInterproscan
IPR000008
all species →
DomainC2 domainInterproscan
IPR037722
all species →
DomainFerlin, third C2 domainInterproscan
IPR012968
all species →
DomainFerIin domainInterproscan
IPR012561
all species →
DomainFerlin B-domainInterproscan
IPR037721
all species →
FamilyFerlin familyInterproscan
IPR037726
all species →
DomainFerlin, first C2 domainInterproscan
IPR037720
all species →
DomainFerlin, second C2 domainInterproscan
IPR037724
all species →
DomainFerlin, fifth C2 domainInterproscan
IPR037725
all species →
DomainFerlin, sixth C2 domainInterproscan
IPR037723
all species →
DomainFerlin, fourth C2 domainInterproscan
IPR032362
all species →
DomainFerlin, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12546
all species →
FER-1-LIKEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0007009
all species →
Biological Processplasma membrane organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19949OTOF; otoferlin-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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