Gene detail

Detailed information of asel_s0065.g3.t2 in Acropora selago

Genomic Location: sc0000065_pilon:53636...57591
NR annotation: XP_029180645.1, lysM and putative peptidoglycan-binding domain-containing protein 4-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z3D4	LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Homo sapiens OX=9606 GN=LYSMD3 PE=1 SV=2
Q5M836	LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Lysmd3 PE=2 SV=1
Q99LE3	LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Mus musculus OX=10090 GN=Lysmd3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008427 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01476 all species →	LysM	LysM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018392 all species →	Domain	LysM domain	Interproscan
IPR036779 all species →	Homologous_superfamily	LysM domain superfamily	Interproscan
IPR045030 all species →	Family	LysM and putative peptidoglycan-binding domain-containing protein 1-4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20932 all species →	LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for asel_s0065.g3.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0065.g3.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0065.g3.t2 across 24 RNA-seq samples of Acropora selago. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.