Gene detail

Detailed information of asel_s0067.g3.t2 in Acropora selago

Genomic Location: sc0000067_pilon:88546...105913
NR annotation: XP_044174128.1, LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 2-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0067.g3.t2

ATGCGTGTTTGTATTCGTGATGAAAGGAGATCAGGAGAACATGACTGGTATGATGCAGGGTTTCAATTGGATGATCCAGGCAGAGTCATTTGCTCCGATAACAAAAAAAGGAATCTGGATTACTTCTTAAGTTGTTTACAGAGTGCGGTAAATTCTGTTGATCCTGAGACAGGTGGAGGGGAACTGGTAATCAGGATCCCTAAGGAAGTTTCAGCATGTGCAAACGGTCGCCAATTCCGTGTCAGCATTGAGTTTTCTCTTGAACATCCAGAGGGGGGAATTCAGTTTGTTGTACCTAAAAGAGAAGGAACCATGGCTCAGCGGTCAGCACATTTGTTCAGTTATGGAAGTGCCAATTCCTCAAGGTTGTGGTTTCCTTGTGTTGATTCATACTCTGAGTTGTGCACTTGGAGCATTGATGTGACAGTTGACAAAGACATGGTGGCAGTTAGCTGTGGAGATCTCATCGAAATGATTTTGACAGCTGACGAAAAGAGAAAAACATATCATTATACTTTGAGTATTCCCACCTCTGCTCCTAATATTGCCTTGGCAGTAGGGCCATTTGAGATCTATGTTGACCCTGTTATGCCAGAAGTCACTCATTTTTGTTTGCCTGGCCTTCTTCCTGTCCTAAAAAATACAACATCATTTCTTCATGAGGCATTTGAATTCTATGAGGAGTACCTGTGCTGTCGTTATCCATATGCACATTACAAGCAAGTGTTTGTGGATCAAGCCTATGATATTTTGTCACCATATTCATCCATGACTATTTTTAATACAAGCCTCCTGCACTCCTCAAGGATCATTGATCAAGGATTTCAAACAAGACAATTTCTTTCACAAGCCTTAGCAGAACAGTTTTTTGGGTGTTATCTCTGTATCCAGACATGGTCAGATTTATGGCTTGCAAGAGGAATATCAGGATATTTGTTTGGTTTATTCATGAAAAAGATGTTTGGTAACAATGAATACAGACACTGGATAAGCTTGGAGTCCAAAGAGGTATGCAGTTATGAGATGCAAGGTCCTGGAATTCCTGCATTGCACAATGCAGGGTCGCTCTCTGCAACAACCTCAGCAACCTCCTCAGGTCAAGCACCGGAGTCCCCTACCCAGGGGGGCCTTATCTTGCACCCTCACTTGACGTCAGGAAGAAACTTGGAGATCATGTGGAGCAAGTCACATCTGGTTATGAGAATGATTGAGATGAGAATTGGACAGGAGCCTCTGCTGCAAGTATTCAACAAATTGTTGTCACTTGCTAACAGTGCAGCACAGCCAAAAGCTGATTACAGCCTTTGGACAAACCTACTACTGTCAACCAGTGGGTTTCTCAAGTCAATATCAACAGTTTCTGGCAAAGACATCAATGTTTTTGTGGATCAGTGGATTTGTCATAGTGGAGTTGCAAAATTCCACGGCAGCTTTATTTTCAATAGGAAGCGTAACATTGTTGAGCTTGAAATCAAGCAGGATATGTCTAGAGGAACAGCCAAATATGTTGGTCCTCTTACAGTCTGTATTCAAGAGCTGGATGGATCATTTAATCACACTGTGCAAATTGAAGATGTATTCAGTCGTCATGAACTTCCATGCCACTCCAAAAGTCGAAGGAACAAGAAAAAGAAAATCCCACTCATGACAGGAGAAGAAGTTGACATGAATCTCGATGCGATGGACTCTGATTCGCCGGTGTTGTGGGTTCGCATTGATCCCGAGGTCACGTGGCTGCGTCATGTGACATTTGAACAGCCTGATTACATGTGGCAGTACCAGCTTAGGCACGAGAGAGATGTCATCGCACAGACTGAGGCCATCCAAGCCTTGGAAAAATTTCCCACACCGGCGACCAGACAGGCTCTTATTGACATGATCAACCAAAGTGAATGTTTTTACAAAGTCAGGTTGGAGGCTTGTCACTGCCTTGCCAAGGTAGCCACTGCTTGTGCATCGAGTTGGACTGGTCATACATCAATGATTGGAATTTTCAGGGACATGTTTGGATCACAGTCGTGTCCGCATATCGTAAAATACAACGATTTCTCTAACTTCATTTCGTATTTTGTACAAAAGACTTTGCCTGTAGCTATTGCCTCTGTGAGGAATGTTCATTCCCAATGCCCGCGGGAAGTTCTTCAATTTATCTTGGATTTAATCAAATATAACGACAACCGGCTTAACAAGTTCACGGATAGCCATTACCGAAGTTCTCTCATCGATGCCCTGGCCAACACTGTCACTCCCGGGGTATCCGTGGTAACTACAAACAGTGAAGGCAAAACAGTGGTGAAACTAACAGAAGAAACGCAGCTCATCTTGAAAGAAGTTACGCGACAGCTGAATTTGGAGAAATTGCTTCCAACTTACAGATATGTAGTTTCTGTTAGTTGTTTAAAAGCGCTCAGAGTATTGCAAGTGAATGGTCACGTGCCTCCTGATCCTGCAGCCTTTGAATATTACGCCAGCTATGGCCATTTTGAAGACGTTCGTCTAGCATCAATTGACTGTCTCGTGGATCTCACAAAAACTGAAAGTCTTGAGAGAGGACTCCATTACTTAATTGGCCTGATTGAAAAAGATCCAGTGCCTTTCATAAGGCACTATGCGCTGTGTGCAATGGCGAAGAATCCTCCATTCTTAAAGAAGTCCGAGTGTCGCCTGAATAATCTGGATTTGGTCGAACGTTTGTGGCGATTGATTAACTGCAGTTGCTCAGTGGACGCTCGGCTCAGACAGGACGGTGTGGAGCTGTACAATGCGTTATGGGGCCGACTTACTCCAGGCTGTGTTCCTCCGCAAGGGATGGGTATTGTGATAGATTTGAAGGAGCGGAAGATTATGAGCTTGTCTCCCCTCCCACCACCGGCGTCCCCGGGATCTGTGAGCGGCGAAGAATCGACAACATCAAGAAAAAGCCACAAGCGAAAGGCATCTCGAGCAGCGTCACCCCCAGATTTAAGCCACTTGGATTCTCAACCCGACACACCGATGAGTATTGAGTCTGCAAATTCAGATGCGAGCAAACTCCGCGTCAAAATTAAGATTGCAGGTGAAGAAAGTGGCGCAGAAAGTGGAGGCGAAATGCGTATGAAAACTGATCCCGATGGAAGCAAGTCCGaacacaaaaagcacaaaaagaagaaaaagaaaaacaaacacaaGGATGACCGAGAGAAGAGAAAACTAAGCACTAGTAGTAGTAATTATGATTCTCCTCTCATGTTCGACACCAGTCTAGTTTAG

Transcript

asel_s0067.g3.t2

CAACTAAATGCAGTTtgtgaagtgatatatgaaatatttcatattttgatctTGGTCGCTAAGCCACGACATAAACAAAATATACAAATGAGTATTTGCTAAACAGCTGAAACATCGACCAGATCAAGGTTTCGTCTCCTTCAAGAAGGAAGCATCAGAGAATCGCAAAGAGGCTCTTATGCGAGAAACGCTGTGCTGATCGATGAACAATAGACCCCTGAGAAATGGACAGAGGAACCTGTTGCGTGTCTTTTGAACGAATGGATAAATGAGTCAGGACCCTTCTTTACTGTTCTGCACGCGAGACGAACCAACATTCCCTTCATCCCCACTCCTTCCGCACGAGTTTGTGTTAAGCTTTGGTCGCGTAAGTCTGGTCATAAGTTGTTCTCTCAATGGCGGCCAAAATGGGCAAAGACACTCATAATCTATGGTAAACGATCTGCGCAATTATTTGGCACCAGAGATGAGAAAAAGCAGCGAATCCCCAAGAAACTTTAAATTGCTTCATCAGACGCTCTGCATAACATCAATCGACTTCAAGCGAAAATGTTTATTCGGTTATGTAGAATTAAAAATCCTCCCTCTGACAACCAACCTTACCAGGTTGAAACTGAACTACAAACAGTGCAATATCCTTTAAATAATTATTTTCTTGCAGTAAATAGTTTATTGAGTGCACTTGTGAAAGGTGATGCAATGTTATATGTACAAATCGGAAATGTTAAATCCTTGACTTTGTGTAAGAATAATGCGTGTTTGTATTCGTGATGAAAGGAGATCAGGAGAACATGACTGGTATGATGCAGGGTTTCAATTGGATGATCCAGGCAGAGTCATTTGCTCCGATAACAAAAAAAGGAATCTGGATTACTTCTTAAGTTGTTTACAGAGTGCGGTAAATTCTGTTGATCCTGAGACAGGTGGAGGGGAACTGGTAATCAGGATCCCTAAGGAAGTTTCAGCATGTGCAAACGGTCGCCAATTCCGTGTCAGCATTGAGTTTTCTCTTGAACATCCAGAGGGGGGAATTCAGTTTGTTGTACCTAAAAGAGAAGGAACCATGGCTCAGCGGTCAGCACATTTGTTCAGTTATGGAAGTGCCAATTCCTCAAGGTTGTGGTTTCCTTGTGTTGATTCATACTCTGAGTTGTGCACTTGGAGCATTGATGTGACAGTTGACAAAGACATGGTGGCAGTTAGCTGTGGAGATCTCATCGAAATGATTTTGACAGCTGACGAAAAGAGAAAAACATATCATTATACTTTGAGTATTCCCACCTCTGCTCCTAATATTGCCTTGGCAGTAGGGCCATTTGAGATCTATGTTGACCCTGTTATGCCAGAAGTCACTCATTTTTGTTTGCCTGGCCTTCTTCCTGTCCTAAAAAATACAACATCATTTCTTCATGAGGCATTTGAATTCTATGAGGAGTACCTGTGCTGTCGTTATCCATATGCACATTACAAGCAAGTGTTTGTGGATCAAGCCTATGATATTTTGTCACCATATTCATCCATGACTATTTTTAATACAAGCCTCCTGCACTCCTCAAGGATCATTGATCAAGGATTTCAAACAAGACAATTTCTTTCACAAGCCTTAGCAGAACAGTTTTTTGGGTGTTATCTCTGTATCCAGACATGGTCAGATTTATGGCTTGCAAGAGGAATATCAGGATATTTGTTTGGTTTATTCATGAAAAAGATGTTTGGTAACAATGAATACAGACACTGGATAAGCTTGGAGTCCAAAGAGGTATGCAGTTATGAGATGCAAGGTCCTGGAATTCCTGCATTGCACAATGCAGGGTCGCTCTCTGCAACAACCTCAGCAACCTCCTCAGGTCAAGCACCGGAGTCCCCTACCCAGGGGGGCCTTATCTTGCACCCTCACTTGACGTCAGGAAGAAACTTGGAGATCATGTGGAGCAAGTCACATCTGGTTATGAGAATGATTGAGATGAGAATTGGACAGGAGCCTCTGCTGCAAGTATTCAACAAATTGTTGTCACTTGCTAACAGTGCAGCACAGCCAAAAGCTGATTACAGCCTTTGGACAAACCTACTACTGTCAACCAGTGGGTTTCTCAAGTCAATATCAACAGTTTCTGGCAAAGACATCAATGTTTTTGTGGATCAGTGGATTTGTCATAGTGGAGTTGCAAAATTCCACGGCAGCTTTATTTTCAATAGGAAGCGTAACATTGTTGAGCTTGAAATCAAGCAGGATATGTCTAGAGGAACAGCCAAATATGTTGGTCCTCTTACAGTCTGTATTCAAGAGCTGGATGGATCATTTAATCACACTGTGCAAATTGAAGATGTATTCAGTCGTCATGAACTTCCATGCCACTCCAAAAGTCGAAGGAACAAGAAAAAGAAAATCCCACTCATGACAGGAGAAGAAGTTGACATGAATCTCGATGCGATGGACTCTGATTCGCCGGTGTTGTGGGTTCGCATTGATCCCGAGGTCACGTGGCTGCGTCATGTGACATTTGAACAGCCTGATTACATGTGGCAGTACCAGCTTAGGCACGAGAGAGATGTCATCGCACAGACTGAGGCCATCCAAGCCTTGGAAAAATTTCCCACACCGGCGACCAGACAGGCTCTTATTGACATGATCAACCAAAGTGAATGTTTTTACAAAGTCAGGTTGGAGGCTTGTCACTGCCTTGCCAAGGTAGCCACTGCTTGTGCATCGAGTTGGACTGGTCATACATCAATGATTGGAATTTTCAGGGACATGTTTGGATCACAGTCGTGTCCGCATATCGTAAAATACAACGATTTCTCTAACTTCATTTCGTATTTTGTACAAAAGACTTTGCCTGTAGCTATTGCCTCTGTGAGGAATGTTCATTCCCAATGCCCGCGGGAAGTTCTTCAATTTATCTTGGATTTAATCAAATATAACGACAACCGGCTTAACAAGTTCACGGATAGCCATTACCGAAGTTCTCTCATCGATGCCCTGGCCAACACTGTCACTCCCGGGGTATCCGTGGTAACTACAAACAGTGAAGGCAAAACAGTGGTGAAACTAACAGAAGAAACGCAGCTCATCTTGAAAGAAGTTACGCGACAGCTGAATTTGGAGAAATTGCTTCCAACTTACAGATATGTAGTTTCTGTTAGTTGTTTAAAAGCGCTCAGAGTATTGCAAGTGAATGGTCACGTGCCTCCTGATCCTGCAGCCTTTGAATATTACGCCAGCTATGGCCATTTTGAAGACGTTCGTCTAGCATCAATTGACTGTCTCGTGGATCTCACAAAAACTGAAAGTCTTGAGAGAGGACTCCATTACTTAATTGGCCTGATTGAAAAAGATCCAGTGCCTTTCATAAGGCACTATGCGCTGTGTGCAATGGCGAAGAATCCTCCATTCTTAAAGAAGTCCGAGTGTCGCCTGAATAATCTGGATTTGGTCGAACGTTTGTGGCGATTGATTAACTGCAGTTGCTCAGTGGACGCTCGGCTCAGACAGGACGGTGTGGAGCTGTACAATGCGTTATGGGGCCGACTTACTCCAGGCTGTGTTCCTCCGCAAGGGATGGGTATTGTGATAGATTTGAAGGAGCGGAAGATTATGAGCTTGTCTCCCCTCCCACCACCGGCGTCCCCGGGATCTGTGAGCGGCGAAGAATCGACAACATCAAGAAAAAGCCACAAGCGAAAGGCATCTCGAGCAGCGTCACCCCCAGATTTAAGCCACTTGGATTCTCAACCCGACACACCGATGAGTATTGAGTCTGCAAATTCAGATGCGAGCAAACTCCGCGTCAAAATTAAGATTGCAGGTGAAGAAAGTGGCGCAGAAAGTGGAGGCGAAATGCGTATGAAAACTGATCCCGATGGAAGCAAGTCCGaacacaaaaagcacaaaaagaagaaaaagaaaaacaaacacaaGGATGACCGAGAGAAGAGAAAACTAAGCACTAGTAGTAGTAATTATGATTCTCCTCTCATGTTCGACACCAGTCTAGTTTAGTTCTCTTCAAAGCAAGGCTTGTGACGTTGCCATAGTAACGCATTACGCAACAAAAGTATCTGCAAGCAACTAAGAGGTTACTTGTGTCACAACGAAACAAAAAATGATTAAGAATTCCTCTTTTTATCTGTTCCTGACAGAGATATTTTTAGTTTATTTTAGTAAAGCCGTCGCCGTTCTTACGGAGTTCCTATGTAACGTTCCCAACAGTTTTAGATATAATTGATTCGCGTCTTCAGTAATATCAGGCAAGTGTCTTTCCGTCATCGAAGAGGTACGAGGAAACACGTAAATACAGCTTTAGGACAAAGTAAAGGATGACTAGTTTGTTCCGTTTGTGTAAAGCAAGTAAATAAATTAACTTATCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PW3	Transcription initiation factor TFIID subunit 2 OS=Danio rerio OX=7955 GN=taf2 PE=2 SV=2
Q5ZIT8	Transcription initiation factor TFIID subunit 2 OS=Gallus gallus OX=9031 GN=TAF2 PE=2 SV=1
Q6P1X5	Transcription initiation factor TFIID subunit 2 OS=Homo sapiens OX=9606 GN=TAF2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002730 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17900 all species →	Peptidase_M1_N	Peptidase M1 N-terminal domain	Domain	Interproscan
PF01433 all species →	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045357 all species →	Domain	Aminopeptidase N-like , N-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR014782 all species →	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan
IPR042097 all species →	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR037813 all species →	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR027268 all species →	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03128	TAF2; transcription initiation factor TFIID subunit 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0067.g3.t2 across 24 RNA-seq samples of Acropora selago. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.