Gene detail

Detailed information of asel_s0069.g52.t1 in Acropora selago

Genomic Location: sc0000069_pilon:598422...608496
NR annotation: XP_029189350.2, atlastin-1-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0069.g52.t1

AAACTCAAGCGCGGCCATTTTGTAAATACGAAGGTCGAGGTTGATTTCCAAGCAAGAGAGGAATGGAGGTCGATCAACCTGACGGTATACGAGGGACAATGGCGAAATCACAAGAGCCGGATTTAGATGCGAAATTATTAGGTGCTCGTCCCATCTCTGTTGTTGTCGCAACACAAAATCACACATTCGAACTTGACGAGAAAGCTTTGGAAGAAATTTTGCTTGATGAAAGTGTACGAGATAAAAAGGTTGCTGTGGTGTCGGTGGCTGGTGCTTTCAGGAAAGGAAAATCGTTTCTGCTGGATTTCTTTCTACGATATTTAGACAGAGAGGGAACGTTTGCTGATTGGGTTGGTGGGGAAACAGAAGCATTGGAAGGATTCTCTTGGCGAGGTGGATCAGAGAGGGACACTACTGGGATTCTTCTTTGGAGTAAACCTTACATCAAGACCCTACCCAATGGCGAAGAGATTGCAGTGCTGTTGATGGACACTCAGGGAGCATTTGATAGCTCATCAACTGTGAAGGACTGTGCAACCATCTTTGCCCTCAGCACTATGACCAGTTCTACTCAGATTTATAATTTGACTCAGAACATTCAAGAGGATGATTTACAGCATCTCCAGCTTTTTACAGAGTATGGAAAGTTGGCCATGGAGGAAAGCAACATCAAACCATTTCAGAGGTTGGTGTTCCTGGTGCGAGACTGGAGTTTTCCTTATGAGGCTCAATATGGAGCTGAAGGCGGAAGTAATGTCTTAGAAAAGCGCTTGCGAATGACTGAAATGCAGCACTCAGAACTGATGCAAGTAAGGAAGCACATCAAGTCCTGCTTCAACGATATTGGTTGCTTTTTGATGCCTCATCCTGGACTCAAAGTAGCCACAAATCCATCCTTTGATGGAAGTCTGAGAGATATCGATGATGAGTTTAAAACACAGCTTCGAGAACTGATTCCTTCAGTTTTGTCAGCTGACAACCTTGTAGTTAAGAGCATCAATGGTGGAGAGGTGACATGCAGAGGACTGTTAGAGTATTTCAAGGCTTACATGAACATATTCCAGGGTGAAGAATTACCTCAGCCTAAATCTATGTTACTGGCCACAGCTGAAGCCAATAATCTAGCTGCCCTGGCAACTTCAAAAGACGCCTACACCAAGCGCATGGAAAAACTTTGTGGGGGCGACACCCCCTACCTTGCACCTCACGAACTTGAGAAAAAACACACAGAAGCGAAGGAAGCATCGTTAGCTATCTTTCATGGAACTCGTAAGATGGGTGGAAGTGAATTTAGCAAAGAGTACTTGGAAAGACTTGAGAAGGAGGTCAACGAAGCCTTTGTTAACTTTGAGAAGCTCAATGATGGCAAGAACATATTTAATGCCGCACGGACACCCGCAGTTTTCTTTACTGTCGTAGTTCTTGGTTACTTTTTCGCAAGCGTATTCGCATCCGTGGGTTTGTTGTCGTTTGTGCGCATGTGCAATTTGGTAATCTGGGCTGGACTGCTGGCTATCGTAGTGTGGGCGTATATTCGATTCAGCGGAGAATTCCGGGATTTTGGAGCCAAGTTGGATCATGCTGCGGAACTTATCTGGGATGAGGTATTCCTACCAGCCTACAATGCCGCATTTAAACGTGGGGTGGAAACAGTTATTGCTTCACGATCACAGTCAGCCCAAAAGCGAGATTAAGAAGCCAAACGCTACGGGGAGAGTTTTCAGACAACGTGATCCTTGAAGTAGTTTCTGCGTGACCTCAGAATTGAAGTGGATACCATGCAAAAGACAGTGATTTGTTGCCTTGCCATGCCAATAAGTAGAATCCTAAATTGGGAATCAATTCTCTTCGTTGTTAGAGTTAAACTTGAAAGGAATGTGCAAGGATTTGGTTTTAGTCGTCAAGAGCGACTCGTTGCGAGCAATTTTTTTTAACCATCCCATGTTCTGAAGGGTAAAGATGAAAGGAAGATTCAAACTGTTAACACGATGGTGGGATGGCGTACAAATCTTTGGGGACATATTTGAATCTTGATATTATCGTTCGTTTGCCTTCCAATTATAGTTTACTCTGATTTTAATTTTCGTATTTTGTTGGGTAAGGCGTGGCAATTTTACGGTCTGGAAGGTGAACATGTAGTTTAAATTGGATTGAATAGAACTCCTTCTTGCGCCTTAAAAAAAATTAATATAGGGAGCAATGATGATTCAAAGCATTCAGTGTTTCCGTCGCGTATTGGATGGCGCAGTTAATTACCTGAAGTACTGGGATTGGTCAACGAATTTTCTGTCCTTTTGCACCACTGGTAATGCTTGTTCAGTGAAGAACAGTAGTTTTGATCGATTAGGAAACTTGTAACAACCAGTAAGTAAGTGCCTTATTTATAAATGATCGATGTAAATTATGAATATTGCACAGTTCATAATTGTGCAGAGGAAGCTGGAATTTGATTGATTTAAGCTGTATCTGCTTTTGCTTGTCAGCTATTCTTTACTGTTGAAGTATCAGGGGCCGATTGCCCTAACCCTAAACCCTAACCATGCTTCGAGAAACTCGGGTCAGATAAGCAGGATCGCTTAGGATGTAAACGAAGGGTGATCCAAAAGTGCATGTGACATCTCGAAATTTGCTAACACAAAACATGATTTTATTCTGTCCATTTGATTCTTTTTCTGGTTGCTTTTTCAGGACAAGTTGACCGGGAAAGTAAATGCAAGCGCGTGAGTTATGCATGATCGATTTTCTTCGTCCGAATATTAttttcgtgatcagtgcaggtttcttccacctcgagttttattttctctgcggattcaggtatcgacgaacagtaaacaagacgacttgca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58D72	Atlastin-1 OS=Bos taurus OX=9913 GN=ATL1 PE=2 SV=2
Q60HD2	Atlastin-1 OS=Macaca fascicularis OX=9541 GN=ATL1 PE=2 SV=1
Q8WXF7	Atlastin-1 OS=Homo sapiens OX=9606 GN=ATL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004590 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02263 all species →	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030386 all species →	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan
IPR036543 all species →	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015894 all species →	Domain	Guanylate-binding protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751 all species →	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0007029 all species →	Biological Process	endoplasmic reticulum organization	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17339	ATL; atlastin	EC:3.6.5.-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.