Gene detail

Detailed information of asel_s0072.g46.t1 in Acropora selago

Genomic Location: sc0000072_pilon:553501...564805
NR annotation: XP_015761761.1, PREDICTED: trichoplein keratin filament-binding protein-like [Acropora digitifera]
Species abbreviation ASELA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0072.g46.t1

CGCTCTGGCACAGATAAACAAAATGGCGCTTCCTACTTTACAACCGTTCTGGTTAAAAAGCTATAAAAACAGAAATGAGGGCCTTCTAGTTCGAAGAAACCAGTTTGAAGCTGACAGAAGAGAAGCTTGGGAAAAAAATGCGCGATATTTTGACAGATCTAATGTTGAAACTACGAAGCAACGGGTTTGGGGTTCAAGAGAGTCTTATCAAGAAAGTATGCAAGCCCTTGATGGTTTATTTAGAGAAAATGAGAAGCAGGAGAAATTGAACAAATTGGAAAAGAGAAGAAATAAGTTGTCTGAACTCTTGCTGAAGGAAACTAAGGAATATGAGGCAGAACTCAAAGAAAAAAGACTTGGTGGTGCTGGAAGACTCTTACACATGAAAGAAAGAGCTGATGAACTTAAAGCAGATAAAGAGGCAAGAAGAAAAGAGTTTGCAGAACAAAAACTGTATGAACATTGGAAACAAAATGCTCCTGAACTCAGAGAGATTGAGGCAGATCAACTAAGGGAGCATGTTGTTAATAGCTGGGCTGATCAAGTTGTGGACAAAGAGGAGAACTTGAAATCAGCAAGATTTGAAGACAGGAAAATGGATGCTGCAATGGAAAGAGAGAGACTCTTAGCCCAACAAAAAGAACAAGCCAAAGAAGAGGAAAAAAAGAGAGAACAAGAAGCTCTTGCAGAGGACCTTAGAGAGCAAATGAAAGAACTTAAATTGAGAGAAGAGGAGGCCCAAATGCTGAAACAAGAGCAAGAGGATCTGGTCAGGGAACAGCATAAACTCGAGGAAGCTGCAGACGCAAGAAGACACTTGGAAGAAGCCAGAAGGAAACGCGAGTTTGGGCGAGTCCTTATACGTCAACACAAAGCTCAAATGAAGAGAAAGAGTAAAGAAATTCAAGAGTCTCTGGAACTTGATTTGAAGATTTTATCAGCATTAGCTCAAAAGAAAGATGAGAGTAAAGCACTTGAGACATCACGACGAGAGAAAGCGAGGGCAGATGCAGAGTACATGAGACAGGTGGTTGCTGATCAGCTGAGGTTGGAGCAGGAGAGAGAAGCAGAGTTAGACATGCTATACAGGGATGAGGCGGCGCGAATGTGGGCAAAGAGAGAAGCTGAGTGGGAACGCGAGAGACTGGCAAGAGAGAGGCTTATGACTGAGGTTCTCAATGTGCGCCAGAGGCAACTAGGTGAGAAAATGGAGGACAATAGAAGACGGCAACAGGAGTCGATTGAAAGTCGAGAGGAGCTTCTCAGAGAATTGGAACAGGTCCAGCAACTGACCGCgagagagaaagctgaggaggagagaaaacgaagggaaagagaagaagagaTGCAAGCACAGATAACCTCTCGCAGAGAAAAGGCCAAAGAACAAGAACAACTTAAAAGGGAGGAGATGGAGAGAGAAAGACGTGAAAGACACGCGTACAATCAAATGCTAAGAAAAGAAGCTGATTTCATGCGAGCAAGAGGACCACAAGCTAGGTTTGCTCCAAGAAGGAGGACAGCATTTGAATAATGTTATTTTATGGATTCAGCTGTTAAGAGATTGCAATGTGGTAATTACGCGGTGCAGAGAACGGGCTGAAGAAGCAGATCAGTTGAAATAATTTCGCCACGAAACGAGCAGCTGAAGTGATTGTTGCATTCGGTGGACTTCGCATACCTCAACACGCCACGCAAATTTCGGATACATATAATGCTTGCATTTCCGTATTTATCAGTGTGGTCTCATAGAGCTTTTCTAGTCACGCGACAAGTGGTGATCGGAGATTCCGGAAAAGAATCTCAACCGGTAACCGCGCAACGCCTTTTTTCCGTTTTTGCATGGGAAGGAGAGGGAAGGTTTGCTTAAAGGGGAAAGGGAGGGGAAAGAGGGTTGACATAAGGCCAGTGTAAATTATGTAGGAATGAAGAAGCATTATCAATGTAAGCCAATTTTGTGATACGTTATTGGGAGAGATGTAAATGTTGTTGTATATAATATTCACCACATTTTTCCCGTCCATCATTGTTGTTTTCTATAATGTCTTTCTTTATTTCCCCAAAAACTGTTTGAAAAATCCTCCTTCAAAGGAAGTTAAACTTTAAGAATAAACAATAAGTAAATGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3TVW5	Trichoplein keratin filament-binding protein OS=Mus musculus OX=10090 GN=Tchp PE=1 SV=2
A0AUT1	Trichoplein keratin filament-binding protein OS=Xenopus laevis OX=8355 GN=tchp PE=2 SV=1
Q9BT92	Trichoplein keratin filament-binding protein OS=Homo sapiens OX=9606 GN=TCHP PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005861 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13868 all species →	TPH	Trichohyalin-plectin-homology domain	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043597 all species →	Domain	Trichohyalin-plectin-homology domain	Interproscan
IPR043596 all species →	Family	CFAP53/TCHP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31183 all species →	TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0045095 all species →	Cellular Component	keratin filament	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0072.g46.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.