Gene detail

Detailed information of asel_s0079.g40.t1 in Acropora selago

Genomic Location: sc0000079_pilon:572066...584193
NR annotation: XP_015758029.1, PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Acropora digitifera]
Species abbreviation ASELA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0079.g40.t1

CTGTGGGGAATTAATCAATTGCGATGTATATTTCCTGCTTTGTATTTGACGGAGTTACCGCTTGATCATTTTCCTCTGGCCAATTTTCCACGTGTGTCTTTTTTAACATTTCTTGAGCTGATTCGAGGCTTTCAAATTCATTACTATAATGATGAAGAACAAGCGAAAATCGCATTTAAAACGCAAAAATATCTTTAAGTCTTCCTCAGAAGTTTCAAGAAAGCGACTGACGCTGGTAGACTCCGGTGATGAAGCGGAGAAAGCGTTGGAAAGACTTGTTTTTGGCGGCGAAAGTGATGTTATTGAGGCACTGAAAGATAACAAGACAACTGAACAAGAAGATTTTTCTTCAAGCGACGAGGATGAAAGAGACCATTTCAGACTGGAGCTGAATCAGCACAAGCAGCAAAGGATCGTGGGTCGACGGCCTGCTTGGGAAGATGATGATGACGAACTGGAGAGTATTGACATCTCAGCTAATCCTCATTTAAATGACTTGAGAGCTACTGAAGATGAGACAGTTGTATCTGGAAAGAAATTTTCACAGAAACTAAGGCAACGGTTTGAAAAACTATATGGCGATGGAAGCTGGGCAGATTTGGACAGGAAAACGAAACACGATGCGGAAAGTAATAGtgatgatgagactgatgatgaagacgatTCAATTCTTAAGAGAGCAGGAACTCTTTTGACGAGGAAGTCAGATTATCTCCCACAAGGGTCTCTCGATATCAGAAGAGTGAAGGATGCCAATAGCGAAAAGCCCTCTAATGCCTCCCTTCAATGCATTGAATTCCACCCCAGTGCCAAGGTCCTACTAACTGCTGGATTCAATAAGACATTAACTCTCTTCCAGATAGATGGCAAGACAAATCCAAAACTGCAAAGTATATTTCTGGACAAGTTTCCCATTCGCACTGCACACTTCAGTGCTGATGGCGAGCAGGTTGTTCTAGCTTCACGCAGGAGACATTTTTATGTGTACGATATGATGAAAGGAGACATAACAAAAATCCCTGGCATAAAAGGTAGAGATGAGTGGTTCTTTGACAGGTTTAAAATTTCACCTGATGGAAAGATTCTAGTTTTCCTAGGCAACAATGGCTATCTGCTTCTTCTTTCAAGCATGACAAAACAGTGGATTGGCAATCTGAAGATGAATGGTTCGGTGGAATCCATAGCATTCAATGCAGATGGATCGCGCATGTATTCTGCAGGAAGTGACGGAGAAGTCTACATATGGGACATGAACGCTCGTCGTTGTGTTCACAAATTCAGGGATGAGGGCTGTTTGACTGCAACTACGCTGGCAGCATCACGTGACGGTCGCTACTTCGCTTGTGGATCTGACAGCGGTGTAGTAAACATTTATGATGACCAGTGTTTACGTTTGACCGAGCCAAAACCACTCAAGGCCATCATGAACTTGACTACCAGCATTGATAAAACTCTATTTAACTCTACAAGCGAAATTCTGGCCATTTCATCGCGTGAAAAAAGGGATTCTTTCAAATTGATCCACTTACCGTCTTTAACTACCTTTTCCAACTGGCCCTCGTCCCGCACTCCTCTCAGATACGTGCACAGTTTCGATTTTTCACCAAACAGTGGCTACCTCTCCATTGGTAATGACAGTGGCAGTGCGTTACTTTTCAGATTGAATCATTTCGTGGACTCGTAATGTGTTGCGAAGGTTTCTTTTGGAGGCGAAAGAGCGAAACGGTCTTCAAAACGAGTCCGCAAAGGACGAGAAGTTGCTGAGGAGCCTGTTTTTGCCTTATTTTTTTTTTTAACCAATGAAAGACCTTCCAGTCCACACGGTATCCACGAGGCCTCCCAAGTTGTCCGCCATTGAAGTCGATATTCCACCCTTCATGAGGATATTAAAATGAATTTCTGTCTTGTGTAAAAATTTTCTACAGTTGTACTCTGTTTGCTTAGTTACTGAAACGTACTGCAGACTGATCGATGTGTTGATAAAATAGCGACTTCTTTCACGCTACAAACATTaaggagcttaaacatgcaacgtttttgaaccacagacggcaaccggaagtgtggtgtttccctattaacttgtcttcacactaccactttgatattgttaattgtctttccactagtagagaggaatagttcgaaatctGggggaggccactgtcctggcgtacgtaatgttcacttgcggttgccgtcagtggctcaaaaacctctcgtactttaagctcgctattatttgtggTTGGCTATGTCAACTTAATTCTTGATTCCATAAAATTTTCTCGTCATTGCTGAAAATAGTGCTCGATTTGTGCAGAGGAATGATGTTTAAAGTTAGGATAAAATTTTGCTTTCCTCAGCACATTGAAAGGTAAAAAAGTTTGTACAAAGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5J1	U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=UTP18 PE=1 SV=3
Q5SSI6	U3 small nucleolar RNA-associated protein 18 homolog OS=Mus musculus OX=10090 GN=Utp18 PE=1 SV=1
P42000	U3 small nucleolar RNA-associated protein 18 homolog OS=Caenorhabditis elegans OX=6239 GN=B0280.9 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005814 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045161 all species →	Family	U3 small nucleolar RNA-associated protein 18	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18359 all species →	WD-REPEAT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034388 all species →	Cellular Component	Pwp2p-containing subcomplex of 90S preribosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0079.g40.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.