Gene detail

Detailed information of asel_s0085.g9.t2 in Acropora selago

Genomic Location: sc0000085_pilon:385199...404225
NR annotation: XP_029189182.1, fibroblast growth factor receptor 2-like [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

asel_s0085.g9.t2

ATGCAGGCAACGCAGTATTGGTGGACATTGTTGGTTAACTTTATTATCAATACACAGTCTGTTCGGCCCGAGCAATATCCGCCGCGGTTTGGAAAAAAACCAAAAGTTCAGAACAACGTTCAGGTAGGGCATAATGTTCGTCTACGCTGTTCAGTTAAGGGAGATCCACTACCAAGATTATCTTGGGTAAAAGATCAAAAGCCTCTGCAGTTCTCATCTAGAATTCGACTTATTTCAAGAGACAATGGAATTGTAAAGATCAAGAACACCCAACTAGTTGACGCGGGAAATTACACCTGCATTGCAGCAAATTCTCTCGGCACAGTAAATGCAACCCTGGAACTCCATGTACGTCAAGATGCACCACCATCCTTCACTGACCAAAGTTTTCTAGAAAGACGATATAGAGCGTGGCCAGCGTCTCACACCATAAGGCTGAAGTGTGAAGCTACAGGAGCACCACCACTCCAATTCAGGTGGTTAAAAGATGGTCAAAGACTACTTTCAAGACGAATGGATCCATATCTTAATAGCTCACTGTGGTTCTTGAGACTAAGAGACGTAGTTCCTGACGACAGTGGAAAATACACTTGCATAGTCACCAACCCATATGGCAGTATAAACCACACTTATACACTTAATGTTGTGGCGAAACCACGATCAAGGCCATTTTTACAAAGCGACCTTCCGAGAAACACGACTGTGAAGCTTGGGGATAATACAACTATGAAATGTATTGTCCTGGTCAGTGGTACGCTTCCAGATTTCAGGTGGTTGAAATGGGACAAAAACATCACATCTCAACCCAAAATGAATGGCACGATGAAAGCTAATGGCTCAAACAAGCTTATTGATCCCATCCATTATAAAACCATCAAAGATGGCGAATATCATGGGGTGCAAGTAGAAATCTATAATGTATCGGACAATGATTTCGGACTTTACACGTGCTTTGTAAGTAACCACATTGGATATGACTACAACAGCGCTTTCTTGATAAAATTTGAGGAGCGTTCAGGGCCCACCACCTCAGGGCACAATTGGTGGGAGAGTGCGTCCAATTTTCAAAACGGGAGTTCAACGGAACGGTCATTTGTTAATGCTGCTCAAGAGAGAACCCAAGTTGGTCTGGTTACTGTTATCATGATACTGGTTGCGGCACTTCTCTTATCCGCAACGATTGCCAGCATAATGTTCTTTTTCTATCGGAAGAAGCTTAAGCATAATTTACTGCAGGAAGAAAAAACTCAAGCGGACATCGTGAGACTTCACGAAGTGCCTGACATAATTGAAGGAACGTCAAACCTTTTGTTGTCAGAACCCAGCACTCCAAATCAAACCGACCAAGGCGCCAGAACGTTTACTTATCCAATTGCAAGGAGAAGATTGAGCTCTTCAGGATCGATTAACTCCACCACACCTCTGTTGAAGAACAGAAGTGGCAGCCATAGGTCACGCTTTTCCTCAGGAGTATCATCAAGAATTGACTCAAATATAGCAGAGGAGTTCTACGAGCTACCCTGTGATGAGGAGTGGGAAATTGAGAGATCTCTGTTAACAATTCGAGAACAACTTGGTGAAGGAGCATTTGGTTTGGTCATGCGAGCAGATGCTGTGGGATTGCCGGATATGCCTACGACAAACTCAGTGGCTGTAAAAATGCTGAAAGCCGATGCAACGGAGAATGAATTGGCCGATCTTTTGTCCGAAATGGACACTATGAAGGAGATTGGAAAACACAAGAATATCATTAATTTGATTGGTGCATGCACACAGAACGGCCCGTTGTTTGTTGTTGTTGAGTTTGCTCCCTTCGGCAATCTCAGACAGTTTCTAAGGGAGAGAAGACCCTCTGAGTATCAGCAGGCCAGATCAAGTGGTTCTGGTGGCTCTTCCCTAACCATCAGAGATTTTGTGTCTTTCGCGTTCCAAATAGCTAGAGGAATGGAATATCTTGGAACAAAAAAGTGTGTACATCGTGATTTGGCAGCCAGAAATATTCTTGTAGGGGAGGATTATGTCATGAAGATCGCAGACTTTGGCTTGGCCAGAAATGTGAGAGACCTGGAGTATTACAGAAAGACAACAGATGGTCGGCTGCCGATCAAATGGCTAGCCATTGAGGCATTGTTTGATAGGGTGTACACCACACAGAGTGATGTTTGGGCGTTTGGTATCTTGTTATGGGAGATTTTCACACTAGGTGGCTCGCCGTACCCCGGAATACCGATAGAAAAACTGTTTGAGCTCTTGAAGTCGGGATATAGAATGCAGAAGCCTCAAAATTGTCCTAATGATATATATGACATTATGTTAAATTGTTGGGATGAAAAGCAAAGCTCCAGAGCCTCTTTCACAGATTTGAGGAAGCTATTTGATGCTATGCTATCGTCAATGACCAGCAAGGAATACTTGGAGATATTGGCTCAATCCATTGAAGATATGGCTGTTGAAATGAGCTCACCAATAAGAGAAGATTCTGATAATAACGATGATGTTATAATTGAGTCTTCATGCTAA

Transcript

asel_s0085.g9.t2

TACTATAACTTCGGCGTTTAACATTTGCAATTCCATTTATACATGTAAATGCAGTTCCATTTAGACTAATGGGGTGTAAGTTCATCATATAGTGGAAGCTAGTAGAGCGTAAATCTCGAGTATCGCTCTCAGGTGGATATTGTGCAGCATGAGCAAAATTTGGCTCGTGAAACACGGACAGGGTGAATGTCTTTTCGCAAGCTAAATGGTTGGAATCAGTTTTTGTCACACTTCGTCAAAACAGATTTACCACGACAGTAAGAAGGATACACGAATTTGAACTTTAAGAAAGCTTACTCATGAACATGAAGAAAGAATTACCAGAAGTGGCAATGCACAATCAATGGAAGAACATTATTATTAATAAGAGGCGGGGCTAACTGTCACTTGAAACCTTTGAAATTTCAGACAAAATTCAACCAAAGCCAACATACCGAGACCAATTAAAATCCACTAAGCAGATGAATTCGTTGACGTTGTTTTACACAATTTACTCTATATTTATCCTAAACGTATCGTAAAAGATCTTCGAAAGGCTAGGAATGCTTAAGGCATCTTGGAAACTGTCACTTTGACTTTGCTATTTGGCCCTGCGTCAGAACAATGCCATCCGATTGACAACATTCATATGTCTTCGCGGCCTTGAAACAATCCAGGCGACCGAACACCATCTCATCAACGAAATCATTTCTTCCCATAGTTATCTTTGATTTGAACACTGAATTTCTGTGGTTAACAGGATGATACATCATAAGCGAAGGCCTTAGTTGCTGTGAGCATGCAGGCAACGCAGTATTGGTGGACATTGTTGGTTAACTTTATTATCAATACACAGTCTGTTCGGCCCGAGCAATATCCGCCGCGGTTTGGAAAAAAACCAAAAGTTCAGAACAACGTTCAGGTAGGGCATAATGTTCGTCTACGCTGTTCAGTTAAGGGAGATCCACTACCAAGATTATCTTGGGTAAAAGATCAAAAGCCTCTGCAGTTCTCATCTAGAATTCGACTTATTTCAAGAGACAATGGAATTGTAAAGATCAAGAACACCCAACTAGTTGACGCGGGAAATTACACCTGCATTGCAGCAAATTCTCTCGGCACAGTAAATGCAACCCTGGAACTCCATGTACGTCAAGATGCACCACCATCCTTCACTGACCAAAGTTTTCTAGAAAGACGATATAGAGCGTGGCCAGCGTCTCACACCATAAGGCTGAAGTGTGAAGCTACAGGAGCACCACCACTCCAATTCAGGTGGTTAAAAGATGGTCAAAGACTACTTTCAAGACGAATGGATCCATATCTTAATAGCTCACTGTGGTTCTTGAGACTAAGAGACGTAGTTCCTGACGACAGTGGAAAATACACTTGCATAGTCACCAACCCATATGGCAGTATAAACCACACTTATACACTTAATGTTGTGGCGAAACCACGATCAAGGCCATTTTTACAAAGCGACCTTCCGAGAAACACGACTGTGAAGCTTGGGGATAATACAACTATGAAATGTATTGTCCTGGTCAGTGGTACGCTTCCAGATTTCAGGTGGTTGAAATGGGACAAAAACATCACATCTCAACCCAAAATGAATGGCACGATGAAAGCTAATGGCTCAAACAAGCTTATTGATCCCATCCATTATAAAACCATCAAAGATGGCGAATATCATGGGGTGCAAGTAGAAATCTATAATGTATCGGACAATGATTTCGGACTTTACACGTGCTTTGTAAGTAACCACATTGGATATGACTACAACAGCGCTTTCTTGATAAAATTTGAGGAGCGTTCAGGGCCCACCACCTCAGGGCACAATTGGTGGGAGAGTGCGTCCAATTTTCAAAACGGGAGTTCAACGGAACGGTCATTTGTTAATGCTGCTCAAGAGAGAACCCAAGTTGGTCTGGTTACTGTTATCATGATACTGGTTGCGGCACTTCTCTTATCCGCAACGATTGCCAGCATAATGTTCTTTTTCTATCGGAAGAAGCTTAAGCATAATTTACTGCAGGAAGAAAAAACTCAAGCGGACATCGTGAGACTTCACGAAGTGCCTGACATAATTGAAGGAACGTCAAACCTTTTGTTGTCAGAACCCAGCACTCCAAATCAAACCGACCAAGGCGCCAGAACGTTTACTTATCCAATTGCAAGGAGAAGATTGAGCTCTTCAGGATCGATTAACTCCACCACACCTCTGTTGAAGAACAGAAGTGGCAGCCATAGGTCACGCTTTTCCTCAGGAGTATCATCAAGAATTGACTCAAATATAGCAGAGGAGTTCTACGAGCTACCCTGTGATGAGGAGTGGGAAATTGAGAGATCTCTGTTAACAATTCGAGAACAACTTGGTGAAGGAGCATTTGGTTTGGTCATGCGAGCAGATGCTGTGGGATTGCCGGATATGCCTACGACAAACTCAGTGGCTGTAAAAATGCTGAAAGCCGATGCAACGGAGAATGAATTGGCCGATCTTTTGTCCGAAATGGACACTATGAAGGAGATTGGAAAACACAAGAATATCATTAATTTGATTGGTGCATGCACACAGAACGGCCCGTTGTTTGTTGTTGTTGAGTTTGCTCCCTTCGGCAATCTCAGACAGTTTCTAAGGGAGAGAAGACCCTCTGAGTATCAGCAGGCCAGATCAAGTGGTTCTGGTGGCTCTTCCCTAACCATCAGAGATTTTGTGTCTTTCGCGTTCCAAATAGCTAGAGGAATGGAATATCTTGGAACAAAAAAGTGTGTACATCGTGATTTGGCAGCCAGAAATATTCTTGTAGGGGAGGATTATGTCATGAAGATCGCAGACTTTGGCTTGGCCAGAAATGTGAGAGACCTGGAGTATTACAGAAAGACAACAGATGGTCGGCTGCCGATCAAATGGCTAGCCATTGAGGCATTGTTTGATAGGGTGTACACCACACAGAGTGATGTTTGGGCGTTTGGTATCTTGTTATGGGAGATTTTCACACTAGGTGGCTCGCCGTACCCCGGAATACCGATAGAAAAACTGTTTGAGCTCTTGAAGTCGGGATATAGAATGCAGAAGCCTCAAAATTGTCCTAATGATATATATGACATTATGTTAAATTGTTGGGATGAAAAGCAAAGCTCCAGAGCCTCTTTCACAGATTTGAGGAAGCTATTTGATGCTATGCTATCGTCAATGACCAGCAAGGAATACTTGGAGATATTGGCTCAATCCATTGAAGATATGGCTGTTGAAATGAGCTCACCAATAAGAGAAGATTCTGATAATAACGATGATGTTATAATTGAGTCTTCATGCTAACAGTAACACTCTTGGAAGTAGAAACGAATTTGAACTCTGCTTTTGTCCGAGTGTTGGCCTGAGATATACTCGAGGTCAAACCCAGTATCAATTGGTTGATGAAAGCACGATGAAAGTTATGGGAGCGGTTTTAAGGGATAGTTTGGTCGACAACACAAATTGGACAAATGCGGACACTTTTTGTTTTCACCAAAGCATCGTGCTCCAAGGATTGTCTTGACGTCTGTATACTAAGCTATCCGGAACTCTTAAGTGACTAGAAACTGAAGCCACCAAATTTACAAAAGCGCATTACCAATTGAAATTGCACTAGGTACGGAAAAATTCATTCTTTAATAGCTTATATTCAAACATTTTATTTCATTCAACTTATCGATATATCAGTTAACCTTCAATACTTGTCTTCTCCTCGGGTGTTTTTGTGCTGAAAATTCTCTTTGTCGACCTTAACtaaatagtaaggggatttgaattgacatttggcataaatattgcgagcaatacttcaagattattctacgtaattttacgagccCTATTTAAGTCAAATATCGCACATAAATCATGTCTTCAACTCCTTTCAAAAGTACCACCTCTCTCAGCCGATCAGAACGCAGACATTTCTCCACTTTCTTGTGAAAAAAGAGTGTGTTTTTCGGCCGCGAGCTCTTCTTTCAAAAAAAAAAGACGGGCATATCCACTGAAATAGTACTCTTGTGTAAGAGAAACAGTACATAAAGTTCATATTGAGAAGCTGTGCGATGCAGAACGCAAACAAAACTCTCGGCATAATTGTAAATAAACAGAAAAATGCACTGTCCGTTTAGAGGAGATGGAGTGCAATCTCGGTATCCAGATGTATCTATATTCAAATATTGCGTAGGAAATGGCAACAGAAAAAAAAGTTTAAATGCACGTTTTTGTGTTCTTTCTTGTGCCAAGATACTCTACTAAAATTTTCACATATTCAGTTGTCGGCTTCATTGAAGAAACCATGCGTAATTACTTGCCGTGAACTTCCCCAACATAGGAAACTTCGATTAAACTGTTGACAAGTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11362	Fibroblast growth factor receptor 1 OS=Homo sapiens OX=9606 GN=FGFR1 PE=1 SV=3
P16092	Fibroblast growth factor receptor 1 OS=Mus musculus OX=10090 GN=Fgfr1 PE=1 SV=2
P18461	Fibroblast growth factor receptor 2 OS=Gallus gallus OX=9031 GN=FGFR2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000215 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR016248 all species →	Family	Fibroblast growth factor receptor family	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005007 all species →	Molecular Function	fibroblast growth factor receptor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008284 all species →	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0008543 all species →	Biological Process	fibroblast growth factor receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0085.g9.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0085.g9.t2 across 24 RNA-seq samples of Acropora selago. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.