Gene detail

Detailed information of asel_s0089.g8.t2 in Acropora selago

Genomic Location: sc0000089_pilon:206006...225755
NR annotation: XP_029189176.2, cytoplasmic dynein 2 intermediate chain 1-like isoform X2 [Acropora millepora]
Species Acropora selago · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

asel_s0089.g8.t2

TTATCAGCTCATCTGTTCATGTACTCGTAAGCATATCTTCTTTTCCTTTTTTTTTGTTGAAAATGTAAAAAAAAAAAACAAACCTTGTAATGTGATGAAAACAGCTGAATGAAACAAGGGAAGTACCTGCCCAGCTTAAAAGAATAATTGATATTGGTGTAATAAGGGGGAGTTTTCACATAGAAAAACGTCAACGTCAGTCAAGGTCAACAACACATGGACGAATAAACTTTGTTGCTGCGAAACAGAAGCAGATTTCCGATAAAGTGGCCTCACGAACAAAAAAGAGAGGACAGGAGTTAATGCGCCTCATTGACCTTGATGTAGCTGTGTTTGACATTTTTGATTTGCCTCCGCTCAATGAGTATGAGCTGTATATTAAAAATTTTGGAAGATCTGACACTAAGCAGGCGTACGTGCAGTGCAATGAAGATAATGTTGAAAAAGAAGTACAAACAGAGGAAATAGAGACAACAACAAAATGGACACAAAACCCTGCAAATGATGCTGCAGGATTTGGAGATGATGAAGATGATTCGCAGGAAGATTTCTCCAGCTTAACAGAAAAGGCCAACATCGACAGCATAAGATTAGCAAGTTTTCTCCAACGAGCCACCCAGACTTGTTTAATATTATTGGAAGAATGCGTCAGTAAACAGACGAACGCTCTATTCAAAGAAAAGAGAGAGATGACTTGCAGTGATGGCTTCCTGCAGCTATCAACCAAGCACTCGTATCTTGAAGGTCGGTCAGTACAATATGTTTACGTATCCCCTGTGCAATCCCACTTCTTGCTTATTGCTTATGCGCCGGTATCAGACAAGAACAAAGCAAGTTCAAAGCCGCCCGACATGGTTCAAGATAAAGGCTTGGTGTGTGTCTGGAACACAAATAACCCGTTCAATCCTGAAAAACTGTTAATATGTGAATCTACCCCTCGGTGCTGTTGTTTGAGTCCATCCAAGGCAACTTTAGCATTTGCTGGGTTGGAGGATGGATCGATTGTTGCATGGGATTTGCGGGAGCCTTTATCCACTCATTACATGAACAAAGTGTGTGATGGAGACAATGAAGTCATTTTCAGGCCACCCACGTTTAGCACAGCTGGTGTCTTAAAAAAAGACGAAAGCCACTTGAGTCCAGTTGTATCTCTTTTGCCACTCGTTATGCCAGGAGACAGTGTCAGGGCCTCTATTGCATCAAACGTGATGTCCGATGACTTGTTAGGATTGTCTTTTCAATTAGCCTCCTTAGAAGAAAATGCCTCAGTTTACCTTTGGGTTGTGGTGGAGCTTGATAGAACAAATAGTGCAGGCTCAGAATCCGATCTAGGACTGTCTCCAGGAGGAAAAATCAAGCTCATTAAAAGTTCTTCAATCGCTGTGCAATCGCCCTTTAGGAACTTTTCAAACCGGAGTAGTTTGCAAGCACTCATTCTCAGATTCCTTCCTCATGATCCGAATCACGTTTATGTTGGCACAGACGGTGGTTATGTTGTTCATTGCGACAGACATGGCGGTCGAGCTTCACCGAAGGCCCACAGACCAGTAATCGATACCATAGAGCGAATAAGAGCCATTGATTTGTCACCATGGCAGTTGCCTTGTATGCTATTAGGCAGTGAGACTGGCAATCTTTGGCTCTTTAACTTAAAAAATGAATTCCCACTGCTCAGTTGGCCATCAAGTACAAGCGGCAGTGCGATATTGTCTGTACGATGGTCTCACAGCAGACCCAGCGTGTTCTTCGTGTTGGATTCACAATCGAATCTACATGTCTGGGATTTACTTAAAAGTGACCAAGGCCCAATTGCGGTGGAGAATTTCAAGCACAATCGCGTAAAGTGTTTTGAGCTGTCCAGCGATTATTCATCGTCAGGAATTGGAATCCCAGGAAGGAATGCTGAACTGATATTGGTTTACGAAAGTGGAGCGGTGGAAATTCACAGAATAAGCAGTGTTTTCTCCAAGGCTTCTGGTGATGACATGGATCGATTTGCGAGCTATCTAGAGGGCGTGGTATAAATATAACAAAAATACATACGTACTTTTGGCCATTGTTGGAGAGAGTCACGTTGAATCTTCGCGAGAAAGACTCATTACAAGCCCTCTTTTATACCTTTAGACTTCGAAGCTGTTATTGCTTTCAGTTTGATTCTATCGAACTTTGTTTCCTTTAAAGAGTATGTAAAGTTAATTTTGTTTTCCAATTGTATTTACTTTGATATACTTGTGACACATGGGCTGCTAATCGCTTGTCATCAAGATTTCAAACACTTATTTATTCTCGTATTGGCGGCTTGTTCGCTGGATGAACATGAGATAAAACAAGGACAAAGAAATCCGCTATGATGTATAAAATCCCGCCGCTAAATATAGCTTTTTGTATTATTTAATTACCTAACTAGATATAATCAAAGGTTAGTAGAGTGCGTTCGATCGAATTGCAGTACCAGCTCCCTAAAAATACACCACGACACAGTTTTCTGATGTTGTCATACCTAGTATCAATCATAATGGTTTAAAGATACTTTGAACAAATGGAGCCAAATTCACTCTAATTGACTAAAGTACTTCACGTGGATTATTCCGGTCGACCACATACATGATGACGATTGTGTGGTACGACGGGGATACTTTGGTTGCTATGACTATCGATTTACCGCATGAAATCTAGGCGAAGTGCTAGCCAACGCAACAGCCGACCAGGCATGCTCTACTTAAGACGAAAAGACTGGTCCGTACCCCAATGACAAATGAGTGTTCTGACGCAAATAGGCTTTTAATGTGATAAGTTAATTGATGGAGTGATTTTACAAAGGTGCTTCTTTACATTACAGTCTGTCAGTCACCCTTTCAAGTGATCTATAGAATTGTTGAGGAAGCTacaacctcggtcacaaatagttgtaacaccttgctagaatagcacggaaattacatgcaggctatttaacaattattcctcgagcctgaatgggctatgagtcaatatagcccataaggccgaaggccgaatgggctattaactcagaggccatgagggcgagaggaataattgttttagtaaaat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WVS4	Cytoplasmic dynein 2 intermediate chain 1 OS=Homo sapiens OX=9606 GN=DYNC2I1 PE=1 SV=3
Q8C761	Cytoplasmic dynein 2 intermediate chain 1 OS=Mus musculus OX=10090 GN=Dync2i1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003649 (this species only)

Pfam domain

No Pfam domain signature was detected for asel_s0089.g8.t2. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR042505 all species →	Family	Cytoplasmic dynein 2 intermediate chain 1	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16022 all species →	WD REPEAT DOMAIN 60	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0045503 all species →	Molecular Function	dynein light chain binding	Interproscan
GO:0045504 all species →	Molecular Function	dynein heavy chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for asel_s0089.g8.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of asel_s0089.g8.t2 across 24 RNA-seq samples of Acropora selago. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

24Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral larvae	24	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14308004	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308005	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308006	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308007	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308008	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308009	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308010	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308011	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308012	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308013	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308014	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308015	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308016	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308017	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308018	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308019	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308020	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308021	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308022	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308023	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308024	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308025	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308026	coral larvae	coral larvae	not recorded	not recorded	SRP315987
SRR14308027	coral larvae	coral larvae	not recorded	not recorded	SRP315987

Source: CnidoSite RNA-seq expression matrices (ASELA_TPM, StringTie quantification over 24 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.